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Platform GPL9672 Query DataSets for GPL9672
Status Public on Feb 23, 2010
Title Affymetrix S. pombe Tiling 1.0FR Array [custom CDF: Sp-TMA.cdf]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Schizosaccharomyces pombe
Manufacturer Affymetrix
Manufacture protocol see the Affymetrix website
 
Description Affymetrix S. pombe Tiling 1.0FR(GPL7715) Array based on a custom CDF (Sp-TMA.cdf) for Schizosaccharomyces pombe.
Identical to GPL7715 but a custom cdf environment was used to extract data. To obtain the custom CDF we filter probes present in Affymetrix S. pombe Tiling 1.0FR Array mapping against the Sanger Centre Schizosaccharomyces pombe genome annotation release of July 17, 2009.
 
Contributor(s) Quintales L, Sánchez M, Antequera F
Submission date Nov 13, 2009
Last update date Feb 23, 2010
Contact name Luis Quintales
Organization name Instituto de Biología Funcional y Genómica (IBFG)
Department Universidad de Salamanca / CSIC
Street address Calle Zacarías González, 2
City Salamanca
ZIP/Postal code 37007
Country Spain
 
Samples (4) GSM470534, GSM470535, GSM470536, GSM470537
Series (1)
GSE19020 Analysis of DNA strand-specific differential expression with high density tiling microarrays
Relations
Alternative to GPL7715 (Alternative CDF [official])

Data table header descriptions
ID
GB_ACC GenBank Accession number
SPOT_ID

Data table
ID GB_ACC SPOT_ID
aah2:SPAC23D3.14c NM_001019980
aah3:SPCC63.02c NM_001022967
aap1:SPBC16A3.20c:SPBC1652.02 NM_001023790
aar2:SPAC3H5.04 NM_001019612
abc1:coq8:SPBC2D10.18 NM_001022157
abc3:SPBC359.05 NM_001020961
abc4:SPAC30.04c NM_001019987
abp2:SPBC1861.02 NM_001022644
ace2:SPAC6G10.12c NM_001019533
acp1:SPAC12B10.07 NM_001020067
acp2:SPAC631.01c NM_001019050
ada1:SPBC106.04 NM_001021062
ada2:SPCC24B10.08c NM_001023002
ade1:min4:SPBC4C3.02c:SPBC405.01 NM_001022225
ade10:SPCPB16A4.03c NM_001023018
ade2:min10:min3:SPAC144.03 NM_001020093
ade3:min11:SPAC6F12.10c NM_001018726
ade4:min13:aza1:SPAC4D7.08c NM_001020392
ade5:ade8:SPCC569.08c XM_001713120
ade6:min1:SPCC1322.13 NM_001023131

Total number of rows: 4856

Table truncated, full table size 148 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9672_Sp-TMA.cdf.gz 8.9 Mb (ftp)(http) CDF

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