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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 08, 2009 |
| Title |
Rosetta/Merck Mouse 38.4K RSTA Custom Affymetrix 1.0 microarray Custom CDF |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Mus musculus |
| Manufacturer |
Rosetta/Merck |
| Manufacture protocol |
ontains 25-mer probes grouped to form probesets. Standard Affy platform.
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| |
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| Description |
Oligonucleotide array
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| Web link |
http://www.rii.com
|
| Contributor(s) |
Kulkarni A, Castle J |
| Submission date |
Dec 01, 2009 |
| Last update date |
Jun 14, 2012 |
| Contact name |
Amit V Kulkarni |
| E-mail(s) |
amit_kulkarni@merck.com
|
| Phone |
206-802-7352
|
| Organization name |
Rosetta Inpharmatics / Merck Pharmaceuticals
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| Department |
Genomics
|
| Lab |
Array Design
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| Street address |
401 Terry Ave N
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98109 |
| Country |
USA |
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| Samples (419)
|
GSM493487, GSM493488, GSM493489, GSM493490, GSM493491, GSM493492
GSM493493, GSM493494, GSM493495, GSM493496, GSM493497, GSM493498, GSM493499, GSM493500, GSM493501, GSM493502, GSM493503, GSM493504, GSM493505, GSM493506, GSM493507, GSM493508, GSM493509, GSM493525, GSM493526, GSM493527, GSM493528, GSM493529, GSM493530, GSM493531, GSM493532, GSM493533, GSM493534, GSM493535, GSM493536, GSM493537, GSM493538, GSM493539, GSM493540, GSM493541, GSM493542, GSM493543, GSM493544, GSM493545, GSM493546, GSM493547, GSM493548, GSM493549, GSM493550, GSM493551, GSM493552, GSM493553, GSM493554, GSM493555, GSM493556, GSM493557, GSM493558, GSM493559, GSM493560, GSM493561, GSM493562, GSM493563, GSM493564, GSM493565, GSM493566, GSM493567, GSM493568, GSM523427, GSM523428, GSM523429, GSM523430, GSM523431, GSM523432, GSM523433, GSM523434, GSM523435, GSM523436, GSM523437, GSM523438, GSM523439, GSM523440, GSM523441, GSM523442, GSM523443, GSM523444, GSM523445, GSM523446, GSM523447, GSM523448, GSM523449, GSM526563, GSM526564, GSM526565, GSM526566, GSM526567, GSM526568, GSM526569, GSM526570, GSM526571, GSM526572, GSM526573, GSM526574, GSM526575, GSM526576, GSM526577, GSM526578, GSM526579, GSM526580, GSM526581, GSM526582, GSM526583, GSM526584, GSM526585, GSM526586, GSM526587, GSM526588, GSM526589, GSM526590, GSM526591, GSM526592, GSM526593, GSM526594, GSM526595, GSM526596, GSM526597, GSM526598, GSM526599, GSM526600, GSM526601, GSM526757, GSM526758, GSM526759, GSM526760, GSM526761, GSM526762, GSM526763, GSM526764, GSM526765, GSM526766, GSM526767, GSM526768, GSM526769, GSM526770, GSM526771, GSM526772, GSM526773, GSM526774, GSM526775, GSM526776, GSM526777, GSM526778, GSM526779, GSM526780, GSM526781, GSM526782, GSM526783, GSM526784, GSM526785, GSM526786, GSM526787, GSM526788, GSM526789, GSM526790, GSM526791, GSM526792, GSM569157, GSM569158, GSM569159, GSM569160, GSM569161, GSM569162, GSM569163, GSM569164, GSM569165, GSM569166, GSM569167, GSM569168, GSM569169, GSM569170, GSM569171, GSM569172, GSM569173, GSM592076, GSM592077, GSM592078, GSM592079, GSM592080, GSM592081, GSM592082, GSM592083, GSM592084, GSM592085, GSM592086, GSM592087, GSM592088, GSM592089, GSM592090, GSM592091, GSM592092, GSM592093, GSM592094, GSM592095, GSM592106, GSM592107, GSM592108, GSM592109, GSM592110, GSM592111, GSM592112, GSM592113, GSM592114, GSM592115, GSM592116, GSM592117, GSM592118, GSM592119, GSM592120, GSM592121, GSM592122, GSM592123, GSM592124, GSM592125, GSM840088, GSM840089, GSM840090, GSM840091, GSM840092, GSM840093, GSM840094, GSM840095, GSM840096, GSM1198304, GSM1198305, GSM1198306, GSM1198307, GSM1198308, GSM1198309, GSM1198310, GSM1198311, GSM1198312, GSM1198313, GSM1198314, GSM1198315, GSM1198316, GSM1198317, GSM1198318, GSM1198319, GSM1198320, GSM1198321, GSM1198322, GSM1198323, GSM1198324, GSM1198325, GSM1198326, GSM1198327, GSM1198328, GSM1198329, GSM1198330, GSM1198331, GSM1198332, GSM1198333, GSM1198334, GSM1198335, GSM1198336, GSM1198337, GSM1198338, GSM1198339, GSM1198340, GSM1198341, GSM1198342, GSM1198343, GSM1198344, GSM1198345, GSM1198346, GSM1198347, GSM1198348, GSM1198349, GSM1198350, GSM1198351, GSM2436281, GSM2436282, GSM2436283, GSM2436284, GSM2436285, GSM2436286, GSM2436287, GSM2436288, GSM2436289, GSM2436290, GSM2436291, GSM2436292, GSM2436293, GSM2436294, GSM2436295, GSM2436296, GSM2436297, GSM2436298, GSM2436299, GSM2436300, GSM2436301, GSM2436302, GSM2436303, GSM2436304, GSM2436305, GSM2436306, GSM2436307, GSM2436308, GSM2436309, GSM2436310, GSM2436311, GSM2436312, GSM2436313, GSM2436314, GSM2436315, GSM2436316, GSM2436317, GSM2436318, GSM2436319, GSM2436320, GSM2436321, GSM2436322, GSM2436323, GSM2436324, GSM2436325, GSM2436326, GSM2436327, GSM2436328, GSM2436329, GSM2436330, GSM2436331, GSM2436332, GSM2436333, GSM2436334, GSM2436335, GSM2436336, GSM2436337, GSM2436338, GSM2436339, GSM2436340, GSM2436341, GSM2436342, GSM2436343, GSM2436344, GSM2436345, GSM2436346, GSM2436347, GSM2436348, GSM2436349, GSM2436350, GSM2436351, GSM2436352, GSM2436353, GSM2436354, GSM2436355, GSM2436356, GSM2436357, GSM2436358, GSM2436359, GSM2436360, GSM2436361, GSM2436362, GSM2436363, GSM2436364, GSM2436365, GSM2436366, GSM2436367, GSM2436368, GSM2436369, GSM2436370, GSM2436371, GSM2436372, GSM2436373, GSM2436374, GSM2436375, GSM2436376, GSM2436377, GSM2436378, GSM2436379, GSM2436380, GSM2436381, GSM2436382, GSM2436383, GSM2436384, GSM2436385, GSM2436386, GSM2436387, GSM2436388, GSM2436389, GSM2436390, GSM2436391, GSM2436392, GSM2436393, GSM2436394, GSM2436395, GSM2436396, GSM2436397, GSM2436398, GSM2436399, GSM2436400, GSM2436401, GSM2436402, GSM2436403, GSM2436404, GSM2436405, GSM2436406, GSM2436407, GSM2436408, GSM2436409, GSM2436410, GSM2436411, GSM2436412, GSM2436413, GSM2436414, GSM2436415, GSM2436416, GSM2436417, GSM2436418, GSM2436419, GSM2436420
|
| Series (8)
|
| GSE19817 |
Gene expression profiling of hypertensive and hypotensive mice |
| GSE20920 |
Gene expression profiling of GPR86 (P2RY13) KO mice |
| GSE21069 |
Genome-wide expression profiling revealed peripheral effects of CB1 inverse agonists in improving insulin sensitivity and metabolic parameters |
| GSE23088 |
siRNAs induced long-term liver ApoB mRNA knockdown significantly lowers serum cholesterol in a mouse model with human-like serum lipids |
| GSE24342 |
Athsq1 is linked to Cdkn2a |
| GSE34593 |
Oncogenic mutation in Smoothened causes severe cerebellar developmental defects and medulloblastoma in mice |
| GSE49375 |
DGAT1 Inhibitor-Induced Gene Expression in Mouse Skin |
| GSE92719 |
Pharmacological AMPK activation induces transcriptional responses congruent to exercise in skeletal and cardiac muscle, adipose tissues and liver |
|
| Data table header descriptions |
| ID |
Rosetta generated unique probe identifier |
| EntrezGeneID |
Entrez Gene identifier for the gene represented |
| GeneSymbol |
Gene symbol for the gene represented |
| GB_ACC |
GenBank Accession |
| PROBE_DERIVED_FROM_TRANSCRIPT |
Actual transcript sequence from which the probe was derieved |
| SPOT_ID |
|
| RosettaGeneModelID |
Rosetta internal gene identifier. |
| GENE_ID |
|
| Data table |
| ID |
EntrezGeneID |
GeneSymbol |
GB_ACC |
PROBE_DERIVED_FROM_TRANSCRIPT |
SPOT_ID |
RosettaGeneModelID |
GENE_ID |
| 100082933_TGI_at |
67645 |
4930511I11Rik |
NM_026290 |
NM_026290 |
|
MMG00289850 |
67645 |
| 100096309_TGI_at |
114872 |
Psg29 |
NM_054064 |
NM_054064 |
|
MMG00352951 |
114872 |
| 100088523_TGI_at |
102182 |
AI931714 |
NM_001081240 |
NM_001081240 |
|
MMG00255363 |
102182 |
| 100109220_TGI_at |
258483 |
Olfr1411 |
NM_146490 |
NM_146490 |
|
MMG00206051 |
258483 |
| 100087230_TGI_at |
73866 |
4930432H15Rik |
|
non-public |
ENSEMBLE: ENSMUST00000039864 |
MMG00302742 |
73866 |
| 100109206_TGI_at |
215031 |
Vgll2 |
NM_153786 |
NM_153786 |
|
MMG00249489 |
215031 |
| 100081589_TGI_at |
|
|
XM_886537 |
XM_886537 |
|
MMG00422076 |
|
| 100081937_TGI_at |
|
|
XM_127403 |
non-public |
|
MMG00222992 |
|
| 100083451_TGI_at |
77803 |
A930021C24Rik |
BY755888 |
BY755888 |
|
MMG00272431 |
77803 |
| 100086572_TGI_at |
18208 |
Ntn1 |
NM_008744 |
NM_008744 |
|
MMG00262012 |
18208 |
| 100119658_TGI_at |
22024 |
Crisp2 |
NM_009420 |
NM_009420 |
|
MMG00289764 |
22024 |
| 100110524_TGI_at |
56716 |
|
NM_019988 |
NM_019988 |
|
MMG00290499 |
56716 |
| 100115860_TGI_at |
66191 |
Ier3ip1 |
AK009116 |
AK009116 |
|
MMG00295334 |
66191 |
| 100080570_TGI_at |
12282 |
Hyou1 |
NM_021395 |
NM_021395 |
|
MMG00257337 |
12282 |
| 100096644_TGI_at |
353211 |
A230083H22Rik |
|
non-public |
ENSEMBLE: ENSMUST00000087689 |
MMG00297586 |
353211 |
| 100091149_TGI_at |
381393 |
4921509C19Rik |
NM_198655 |
NM_198655 |
|
MMG00208580 |
381393 |
| 100105621_TGI_at |
667618 |
EG667618 |
XM_991508 |
XM_991508 |
|
MMG00375442 |
667618 |
| 100110056_TGI_at |
20344 |
Selp |
BC109158 |
BC109158 |
|
MMG00202608 |
20344 |
| 100086422_TGI_at |
56218 |
Patz1 |
NM_019574 |
NM_019574 |
|
MMG00267132 |
56218 |
| 100097784_TGI_at |
|
|
AK043502 |
AK043502 |
|
MMG00277038 |
|
Total number of rows: 38385
Table truncated, full table size 2636 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL9734_RM-MG01Aa520487_custom_MMPM.cdf.gz |
10.3 Mb |
(ftp)(http) |
CDF |
| GPL9734_repid_seq_probesetid.txt.gz |
4.3 Mb |
(ftp)(http) |
TXT |
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