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Series GSE100625 Query DataSets for GSE100625
Status Public on Oct 08, 2017
Title Growth differentiation factor 15 (GDF15) promotes human rhinovirus infection and inflammation
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Analysis of normal human tracheobronchial epithelial cells treated with or without recombinant human GDF15 for two hours. Results provide insights of the genome-wide transcriptional regulation by Smad1 associated with GDF15 in human airway epithelium.
 
Overall design Normal human tracheobronchial epithelial cells at passage 2 were seeded onto collagen-coated 60 mm tissue culture dishes (4 x105 cells) in bronchial epithelial cell growth medium (BEGM) with SingleQuots™ supplements (Lonza, Walkersville, MD) at 37°C, 5% CO2. At 80-90% confluence, cells were treated with 0.1% BSA-HCl (control) or 25 ng/ml of recombinant human GDF15 (rhGDF15, R&D Systems, Minneapolis, MN) for 2 h.
 
Contributor(s) OConnor BP, Harmacek LD, Wu Q, Leach S
Citation(s) 29192094
Submission date Jun 28, 2017
Last update date Jul 25, 2021
Contact name Brian Patrick OConnor
E-mail(s) oconnorb@njhealth.org
Organization name National Jewish Health
Department Center for Genes, Environment and Health
Lab OConnor
Street address 1400 Jackson St
City Denver
State/province Colorado
ZIP/Postal code 80206
Country USA
 
Platforms (1)
GPL17303 Ion Torrent Proton (Homo sapiens)
Samples (4)
GSM2689473 ChIP_Psmad_BSA
GSM2689474 ChIP_Psmad_GDF15
GSM2689475 Input_BSA
Relations
BioProject PRJNA392313
SRA SRP110705

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE100625_ALL_peaks.sorted.mergeD0.bed.gz 18.8 Kb (ftp)(http) BED
GSE100625_RAW.tar 50.0 Kb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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