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GEO accession:
Series GSE101217
Query DataSets for GSE101217
Status
Public on Aug 12, 2021
Title
Polymerase II pausing licenses cell-cycle progression
Organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
34620876
Submission date
Jul 11, 2017
Last update date
Oct 27, 2021
Contact name
Sabine Dietmann
Organization name
Washington University School of Medicine
Street address
4565 McKinley Avenue
City
St Louis
State/province
MO
ZIP/Postal code
63110
Country
USA
Platforms (2)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL20301
Illumina HiSeq 4000 (Homo sapiens)
Samples (112)
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More...
GSM2700406
H3K4Me1 ChIP 18h control rep 1
GSM2700407
H3K4Me1 ChIP 18h control rep 2
GSM2700408
H3K4Me1 ChIP 18h control rep 3
GSM2700409
H3K4Me1 ChIP 18h control rep 4
GSM2700410
H3K4Me1 ChIP 18h Rn7sk KD rep 1
GSM2700411
H3K4Me1 ChIP 18h Rn7sk KD rep 2
GSM2700412
H3K4Me1 ChIP 18h Rn7sk KD rep 3
GSM2700413
H3K4Me1 ChIP 18h Rn7sk KD rep 4
GSM2700414
H3K27Ac ChIP 18h control rep 1
GSM2700415
H3K27Ac ChIP 18h control rep 2
GSM2700416
H3K27Ac ChIP 18h control rep 3
GSM2700417
H3K27Ac ChIP 18h control rep 4
GSM2700418
H3K27Ac ChIP 18h Rn7sk rep 1
GSM2700419
H3K27Ac ChIP 18h Rn7sk rep 2
GSM2700420
H3K27Ac ChIP 18h Rn7sk rep 3
GSM2700421
H3K27Ac ChIP 18h Rn7sk rep 4
GSM2700422
RNA Pol II ChIP 18h control rep 1
GSM2700423
RNA Pol II ChIP 18h control rep 2
GSM2700424
RNA Pol II ChIP 18h control rep 3
GSM2700425
RNA Pol II ChIP 18h control rep 4
GSM2700426
RNA Pol II ChIP 18h Rn7sk rep 1
GSM2700427
RNA Pol II ChIP 18h Rn7sk rep 2
GSM2700428
RNA Pol II ChIP 18h Rn7sk rep 3
GSM2700429
RNA Pol II ChIP 18h Rn7sk rep 4
GSM2700430
Whole cell extract control 18h rep 1
GSM2700431
Whole cell extract control 18h rep 2
GSM2700432
Whole cell extract control 18h rep 3
GSM2700433
Whole cell extract control 18h rep 4
GSM2700434
Whole cell extract Rn7sk 18h rep 1
GSM2700435
Whole cell extract Rn7sk 18h rep 2
GSM2700436
Whole cell extract Rn7sk 18h rep 3
GSM2700437
Whole cell extract Rn7sk 18h rep 4
GSM2700438
Total RNAseq 24h control rep 1
GSM2700439
Total RNAseq 24h control rep 2
GSM2700440
Total RNAseq 24h control rep 3
GSM2700441
Total RNAseq 24h control rep 4
GSM2700442
Total RNAseq 24h Rn7sk rep 1
GSM2700443
Total RNAseq 24h Rn7sk rep 2
GSM2700444
Total RNAseq 24h Rn7sk rep 3
GSM2700445
Total RNAseq 24h Rn7sk rep 4
GSM2700446
4SU RNAseq 24h control rep 1
GSM2700447
4SU RNAseq 24h control rep 2
GSM2700448
4SU RNAseq 24h control rep 3
GSM2700449
4SU RNAseq 24h control rep 4
GSM2700450
4SU RNAseq 24h Rn7sk rep 1
GSM2700451
4SU RNAseq 24h Rn7sk rep 2
GSM2700452
4SU RNAseq 24h Rn7sk rep 3
GSM2700453
4SU RNAseq 24h Rn7sk rep 4
GSM2700454
Total RNAseq 48h calcium low control rep 1
GSM2700455
Total RNAseq 48h calcium low control rep 2
GSM2700456
Total RNAseq 48h calcium low control rep 3
GSM2700457
Total RNAseq 48h calcium low control rep 4
GSM2700458
Total RNAseq 48h calcium low Rn7sk rep 1
GSM2700459
Total RNAseq 48h calcium low Rn7sk rep 2
GSM2700460
Total RNAseq 48h calcium low Rn7sk rep 3
GSM2700461
Total RNAseq 48h calcium low Rn7sk rep 4
GSM2700462
Total RNAseq 48h calcium high control rep 1
GSM2700463
Total RNAseq 48h calcium high control rep 2
GSM2700464
Total RNAseq 48h calcium high control rep 3
GSM2700465
Total RNAseq 48h calcium high control rep 4
GSM2700466
Total RNAseq 48h calcium high Rn7sk rep 1
GSM2700467
Total RNAseq 48h calcium high Rn7sk rep 2
GSM2700468
Total RNAseq 48h calcium high Rn7sk rep 3
GSM2700469
Total RNAseq 48h calcium high Rn7sk rep 4
GSM3891871
7SK.1h_PlaB.repl1.4SU
GSM3891872
7SK.1h_PlaB.repl2.4SU
GSM3891873
7SK.1h_PlaB.repl3.4SU
GSM3891874
7SK.1h_PlaB.repl4.4SU
GSM3891875
7SK.4h_PlaB.repl1.4SU
GSM3891876
7SK.4h_PlaB.repl2.4SU
GSM3891877
7SK.4h_PlaB.repl3.4SU
GSM3891878
7SK.4h_PlaB.repl4.4SU
GSM3891879
7SK.no_PlaB.repl1.4SU
GSM3891880
7SK.no_PlaB.repl2.4SU
GSM3891881
7SK.no_PlaB.repl3.4SU
GSM3891882
7SK.no_PlaB.repl4.4SU
GSM3891883
CTR.1h_PlaB.repl1.4SU
GSM3891884
CTR.1h_PlaB.repl2.4SU
GSM3891885
CTR.1h_PlaB.repl3.4SU
GSM3891886
CTR.1h_PlaB.repl4.4SU
GSM3891887
CTR.4h_PlaB.repl1.4SU
GSM3891888
CTR.4h_PlaB.repl2.4SU
GSM3891889
CTR.4h_PlaB.repl3.4SU
GSM3891890
CTR.4h_PlaB.repl4.4SU
GSM3891891
CTR.no_PlaB.repl1.4SU
GSM3891892
CTR.no_PlaB.repl2.4SU
GSM3891893
CTR.no_PlaB.repl3.4SU
GSM3891894
CTR.no_PlaB.repl4.4SU
GSM3891895
7SK.1h_PlaB.repl1.Total
GSM3891896
7SK.1h_PlaB.repl2.Total
GSM3891897
7SK.1h_PlaB.repl3.Total
GSM3891898
7SK.1h_PlaB.repl4.Total
GSM3891899
7SK.4h_PlaB.repl1.Total
GSM3891900
7SK.4h_PlaB.repl2.Total
GSM3891901
7SK.4h_PlaB.repl3.Total
GSM3891902
7SK.4h_PlaB.repl4.Total
GSM3891903
7SK.no_PlaB.repl1.Total
GSM3891904
7SK.no_PlaB.repl2.Total
GSM3891905
7SK.no_PlaB.repl3.Total
GSM3891906
7SK.no_PlaB.repl4.Total
GSM3891907
CTR.1h_PlaB.repl1.Total
GSM3891908
CTR.1h_PlaB.repl2.Total
GSM3891909
CTR.1h_PlaB.repl3.Total
GSM3891910
CTR.1h_PlaB.repl4.Total
GSM3891911
CTR.4h_PlaB.repl1.Total
GSM3891912
CTR.4h_PlaB.repl2.Total
GSM3891913
CTR.4h_PlaB.repl3.Total
GSM3891914
CTR.4h_PlaB.repl4.Total
GSM3891915
CTR.no_PlaB.repl1.Total
GSM3891916
CTR.no_PlaB.repl2.Total
GSM3891917
CTR.no_PlaB.repl3.Total
GSM3891918
CTR.no_PlaB.repl4.Total
This SuperSeries is composed of the following SubSeries:
GSE101215
Polymerase II pausing licenses cell-cycle progression (ChIP-Seq)
GSE101216
Polymerase II pausing licenses cell-cycle progression (RNA-Seq)
GSE132782
7SK-controlled RNA polymerase II pausing orchestrates gene transcription with splicing
Relations
BioProject
PRJNA393887
Download family
Format
SOFT formatted family file(s)
SOFT
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Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE101217_RAW.tar
6.8 Gb
(http)
(custom)
TAR (of BW, TXT)
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