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Series GSE102722 Query DataSets for GSE102722
Status Public on Nov 30, 2017
Title Organotypic three-dimensional cancer cell cultures mirror drug responses in vivo: Lessons learned from the inhibition of EGFR signaling
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Complex three-dimensional (3D) in vitro model systems that recapitulate human tumor biology are essential to better understand the pathophysiology of the disease and to aid in the discovery of novel anti-cancer therapies. 3D organotypic cultures exhibit intercellula communication, nutrient and oxygen gradients, and cell polarity that is lacking in traditional two-dimensional (2D) monolayer cultures. In the present study, we could demonstrate that 2D and 3D cancer models exhibit different drug sensitivities towards both targeted inhibitors of EGFR signaling and broad acting cytotoxic agents. Changes in the kinase activities of Erb family members and differential expression of apoptosis- and survival-associated genes before and after drug treatment may account for the differential drug sensitivities. Importantly, EGFR oncoprotein addiction was evident only in the 3D cultures mirroring the effect of EGFR inhibition in the clinic. Furthermore, targeted drug efficacy was strongly increased when incorporating cancer-associated fibroblasts into the 3D cultures. Taken together, we could provide conclusive evidence that complex 3D cultures are more predictive of the clinical outcome than their 2D counterparts. In the future, 3D cultures will be instrumental for understanding the mode of action of drugs, identifying genotype-drug response relationships and developing patient-specific and personalized cancer treatments.
 
Overall design 6 samples, 3 replicates each.
Cell line: HCC827. Matrigel coating: yes, no. Dimensionality: 2D, 3D.
 
Contributor(s) Eger A
Citation(s) 29296175
Submission date Aug 16, 2017
Last update date Jul 25, 2021
Contact name Thomas Mohr
E-mail(s) thomas.mohr@mohrkeg.co.at
Phone +43 2236 56793
Organization name Medical University of Vienna
Department Institute of Cancer Research
Street address Borschkegasse 8a
City Vienna
ZIP/Postal code 1090
Country Austria
 
Platforms (1)
GPL5175 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [transcript (gene) version]
Samples (6)
GSM2743751 HCC827_2D_without.coating rep1
GSM2743752 HCC827_2D_without.coating rep2
GSM2743753 HCC827_2D_without.coating rep3
Relations
BioProject PRJNA398502

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE102722_RAW.tar 128.6 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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