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Series GSE103287 Query DataSets for GSE103287
Status Public on Mar 15, 2020
Title Assessment of DNA methylation patterns related to femur bone morphology in nonhuman primate bone using the 850K array
Platform organism Homo sapiens
Sample organisms Callithrix jacchus; Chlorocebus aethiops; Macaca mulatta; Pan troglodytes; Papio sp.
Experiment type Methylation profiling by array
Summary The aim of this study was to characterize the genome-wide DNA methylation profiles of nonhuman primate trabecular bone samples (n=58), identify how they relate to aspects of femur bone morphology, and assess how these epigenetic patterns vary between taxa. The Illumina Infinium MethylationEPIC array was used to assess genome-wide methylation patterns.
 
Overall design Bisulphite converted DNA from the 58 nonhuman primate bone samples were hybridized to the Illumina Infinium MethylationEPIC array.
 
Contributor(s) Housman G
Citation(s) 32170728
Submission date Aug 30, 2017
Last update date Jul 25, 2021
Contact name Genevieve Housman
E-mail(s) ghousman@uchicago.edu
Organization name University of Chicago
Department Genetic Medicine
Street address 920 East 58th Street, CLSC 317
City Chicago
State/province IL
ZIP/Postal code 60637
Country USA
 
Platforms (1)
GPL21145 Infinium MethylationEPIC
Samples (58)
GSM2759838 genomic DNA from healthy adult distal femur trabecular bone Panu55_B (nhp850K)
GSM2759839 genomic DNA from healthy adult distal femur trabecular bone Panu41_B (nhp850K)
GSM2759840 genomic DNA from healthy adult distal femur trabecular bone Panu39_B (nhp850K)
This SubSeries is part of SuperSeries:
GSE103332 Intra- and Inter-Specific Investigations of Skeletal DNA Methylation Patterns and Femur Morphology in Nonhuman Primates
Relations
BioProject PRJNA401904

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE103287_RAW.tar 960.4 Mb (http)(custom) TAR (of IDAT)
GSE103287_matrix_nhp850K_raw_signal.csv.gz 315.6 Mb (ftp)(http) CSV
Processed data included within Sample table
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