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Series GSE103403 Query DataSets for GSE103403
Status Public on Jun 11, 2018
Title Oct4 regulates the embryonic axis and coordinates exit from pluripotency and germ layer specification in the mouse embryo
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Lineage segregation in the mouse embryo is a finely controlled process dependent upon coordination of signalling pathways and transcriptional responses. We employed conditional deletion of Oct4 to investigate consequences of interference with embryonic patterning and lineage specification. Nanog becomes upregulated in the first epiblast cells to lose Oct4, leading to an expanded Nanog-positive domain. The primitive streak forms in the presumptive proximal posterior region, but epithelial to mesenchymal transition is impeded by dramatic increase of E-cadherin, leading to complete disorganisation and failure to generate germ layers. Formerly, expression domains of lineage markers were disrupted. Specifically, definitive endoderm expanded, the boundaries between presumptive anterior and posterior domains blurred and an ectopic posterior-like region appeared anteriorly, suggesting a role for Oct4 in maintaining the embryonic axis. Despite intermixing of lineage marker domains in mutants, cells co-expressing distinct lineage genes were not observed, suggesting that Oct4 deletion does not alter the connectivity of the transcription networks which underlie cell fate decisions in vivo. Molecular profiling corroborated genome-wide posteriorisation of mutants and disrupted expression of genes involved in gastrulation. Lastly, we confirmed a requirement for Oct4 in self-renewal of post-implantation epiblast ex vivo
 
Overall design mRNA profiling of OCT4- and OCT4+ mouse in post implantation stage
 
Contributor(s) Chia le Bin G, Mulas C, Jones KA, Stirparo GG, Nichols J
Citation(s) 29915126
Submission date Sep 01, 2017
Last update date May 15, 2019
Contact name Giuliano Giuseppe Stirparo
E-mail(s) giulianostirparo@gmail.com
Organization name University of Cambridge
Department Wellcome MRC Cambridge Stem Cell
Lab Jeffrey Cheah Biomedical Centre
Street address Puddicombe Way
City Cambridge
State/province Cambridgeshire
ZIP/Postal code CB2 0AW
Country United Kingdom
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (5)
GSM2770623 wt rep 1
GSM2770624 wt rep 2
GSM2770625 mut rep 1
Relations
BioProject PRJNA401721
SRA SRP116950

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Supplementary file Size Download File type/resource
GSE103403_Count.txt.gz 533.0 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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