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Series GSE103958 Query DataSets for GSE103958
Status Public on Jan 23, 2018
Title Transcript dynamics in classically and alternatively activated macrophages
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Using RNA-seq, we have reported that signaling crosstalk among IFN-γ and LPS is integrated at the level of transcriptome and have associated with TFs and TcoFs changes. In addition, we also argue that the transcriptional differences between BMDMs and RAW264.7 macrophage cell line as well as IL-4 and IL-13 on M2 macrophages activation.
Overall design Examination of effects of IFN-γ mediated LPS treated versus only LPS treated BMDMs, IL-4 and IL-13 treated BMDMs and LPS treated BMDMs and RAW264.7 macrophage cell line, were generated by deep sequencing on an Illumina HiSeq 2500 (101 cycles PE lane).
Contributor(s) Chai Y
Citation(s) 29403501
Submission date Sep 18, 2017
Last update date Jul 25, 2021
Contact name Young Gyu Chai
Phone +82-31-400-5513
Organization name Hanyang Univ.
Department Molecualr & Life Science
Street address 55 Hanyangdaehak-ro
City Ansan
State/province Gyeonggi-do
ZIP/Postal code 15588
Country South Korea
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (25)
GSM2786903 BMDM-Control-1
GSM2786904 BMDM-Control-2
GSM2786905 BMDM-Control-3
BioProject PRJNA407775
SRA SRP117927

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE103958_RAW.tar 3.4 Mb (http)(custom) TAR (of TAB)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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