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Series GSE105156 Query DataSets for GSE105156
Status Public on Feb 08, 2018
Title Genomewide screening for pectoral fin MN specific markers
Organism Leucoraja erinacea
Experiment type Expression profiling by high throughput sequencing
Summary The goal of this study is to find skate pectoral fin motor neuron markers. Total RNA was extracted from manually sorted pectoral fin MNs, which were retrogradely labeled and tail spinal cord cells. By comparing RNA expression profiles of pectoral fin MNs and tail spinal cord neurons, we could identity general MN, MN columnar, and subset MN pool markers for fin MNs.
 
Overall design Examination of RNA expression profiles in two different samples: pectoral fin MNs and tail spinal cord cells.
 
Contributor(s) Baek M, Brown SM, Heguy A, Dasen JS
Citation(s) 29425489
Submission date Oct 19, 2017
Last update date May 15, 2019
Contact name Jeremy S Dasen
Organization name NYU School of Medicine
Department Neuroscience Program
Lab SML504
Street address 522 First Avenue
City New York
State/province NY
ZIP/Postal code 10016
Country USA
 
Platforms (1)
GPL24146 Illumina HiSeq 2500 (Leucoraja erinacea)
Samples (6)
GSM2823411 P1
GSM2823412 P2
GSM2823413 P3
Relations
BioProject PRJNA414974
SRA SRP120492

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE105156_ExpressionTable.xlsx 965.8 Kb (ftp)(http) XLSX
GSE105156_Spades_transcripts.fasta.gz 22.5 Mb (ftp)(http) FASTA
GSE105156_Trinity.fasta.gz 10.7 Mb (ftp)(http) FASTA
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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