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Series GSE106514 Query DataSets for GSE106514
Status Public on Mar 12, 2019
Title Single-cell analysis reveals heterogeneity of high endothelial venules and different regulation of genes controlling lymphocyte entry to lymph nodes
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary High endothelial venules (HEVs) are specialized blood vessels allowing recirculation of naïve lymphocytes through lymphoid organs. Here, using full length single-cell RNA sequencing, RNA-FISH, flow cytometry and immunohistofluorescence, we reveal the heterogeneity of HEVs in adult mouse peripheral lymph nodes (PLNs) under conditions of homeostasis, antigenic stimulation and after inhibition of lymphotoxin-b receptor (LTbR) signaling. We demonstrate that HEV endothelial cells are in an activated state during homeostasis, and we identify the genes characteristic of the differentiated HEV phenotype. We show that LTbR signaling regulates many HEV genes and pathways in resting PLNs, and that immune stimulation induces a global and temporary inflammatory phenotype in HEVs without compromising their ability to recruit naïve lymphocytes. Most importantly, we uncover differences in the regulation of genes controlling lymphocyte trafficking, Glycam1, Fut7, Gcnt1, Chst4, B3gnt3 and Ccl21a, that have implications for HEV function and regulation in health and disease.
 
Overall design Comparison of High Endothelial Cells and Blood Endothelial Cells from mouse lymph nodes under 4 different conditions with a total of 220 single cells.
 
Contributor(s) Veerman KM, Girard J
Citation(s) 30865898
Submission date Nov 03, 2017
Last update date Jul 22, 2020
Contact name Jean-Philippe Girard
Organization name Institut de Pharmacologie et de Biologie Structurale
Street address 205 Route de Narbonne
City Toulouse
ZIP/Postal code 31400
Country France
 
Platforms (1)
GPL21493 Illumina HiSeq 3000 (Mus musculus)
Samples (220)
GSM2839472 BEC_01
GSM2839473 BEC_02
GSM2839474 BEC_03
Relations
BioProject PRJNA417075
SRA SRP123603

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE106514_FPKM_HECs_Veerman.txt.gz 3.3 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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