NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE107142 Query DataSets for GSE107142
Status Public on Sep 18, 2020
Title IRF2 maintains the stemness of colonic stem cells by limiting physiological stress from interferon
Organism Mus musculus
Experiment type Expression profiling by array
Summary The physiological stresses that diminish tissue stem-cell characteristics remain largely unknown. We previously reported that type I interferon (IFN), which is essential for host antiviral responses, is a physiological stressor for hematopoietic stem cells (HSCs) and that interferon regulatory factor-2 (IRF2), which attenuates IFN signaling, maintains the stemness of HSCs. Here, we explore the role of IRF2 in maintaining colonic epithelial stem cells (CoSCs). In mice with a conditional Irf2 deletion in the intestinal epithelium (hereafter Irf2ΔIEC mice), both the number and the organoid-forming potential of CoSCs was markedly reduced. Consistent with this finding, the ability of Irf2ΔIEC mice to regenerate colon epithelium after injury by dextran sodium sulfate (DSS) was severely impaired, independently of microbial dysbiosis. Mechanistically, CoSCs differentiated prematurely into transit-amplifying (TA) cells in Irf2ΔIEC mice, which might explain their low CoSC counts. A similar phenotype was induced in wild-type mice by repeated injections of low doses of poly(I:C), which induces type I IFN. Collectively, we demonstrated that chronic IFN signaling physiologically stresses CoSCs. This study provides new insight into the molecular mechanisms that maintain functional CoSCs throughout life.
 
Overall design To identify the differentially regulated biological process that accounts for the reduction of CoSCs in Irf2ΔIEC mice, we performed microarray of sorted colonic crypt epithelial cells from naïve Irf2ΔIEC and Irf2fl/fl control mice.
 
Contributor(s) Minamide K, Sato T, Nakanishi Y, Asano J, Ohno H, Kato T, Ohteki T
Citation(s) 32901054
https://0-doi-org.brum.beds.ac.uk/10.1038/s41598-020-71633-3
Submission date Nov 20, 2017
Last update date Oct 02, 2020
Contact name Kana MINAMIDE
E-mail(s) kananm.bre@mri.tmd.ac.jp
Organization name Tokyo Medical and Dental University
Department Medical Research Institute
Lab Laboratory of Biodefence research
Street address 1-5-45
City Bunkyo-ku
State/province Tokyo
ZIP/Postal code 113-8510
Country Japan
 
Platforms (1)
GPL13912 Agilent-028005 SurePrint G3 Mouse GE 8x60K Microarray (Feature Number version)
Samples (2)
GSM2861660 Colon_crypt_epithelial_cell_naive_control
GSM2861661 Colon_crypt_epithelial_cell_naive_cKO
Relations
BioProject PRJNA419153

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE107142_RAW.tar 14.3 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap