NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE107543 Query DataSets for GSE107543
Status Public on Nov 30, 2018
Title The role of Gch1 and Nos2 in the macrophage response to BCG infection
Organism Mus musculus
Experiment type Expression profiling by array
Summary Inducible nitric oxide synthase (iNOS) plays a crucial role in controlling growth of mycobacteria, presumed to be via nitric oxide (NO) mediated killing. However, NOS enzymes can also signal through NO-independent pathways, and production of NO by NOS requires the cofactor tetrahydrobiopterin (BH4). We compared Nos2-/- mice to mice with macrophage BH4 deficiency (Gch1fl/flTie2cre), due to a leukocyte-specific deletion of Gch1, to uncover the specific contribution of NO-independent NOS functions to anti-mycobacterial immunity.
We used microarrays to detail the global programme of gene expression in uninfected and BCG infected macrophages that were either deficient in iNOS (Nos2-/- vs C57bl6/J) or BH4/Gch1 (GCHfl/flTie2cre vs GCHfl/fl)
 
Overall design Bone Marrow Derived Macrophages (BMDM) were cultured form C57bl6/J (Nos2+/+), Nos2-/-, GCHfl/fl and GCHfl/flTie2cre bone marrow. Differentiated macrophages from 4 animals per genotype were infected with BCG (Pasteur) in the presence of interferon gamma or left uninfected for 24 hours as control samples.
 
Contributor(s) McNeill E, Stylianou E, McShane H, Channon KM
Citation(s) 30573728
Submission date Nov 30, 2017
Last update date Jan 02, 2019
Contact name Eileen McNeill
Organization name University of Oxford
Department Radcliffe Department of Medicine
Lab Division of Cardiovascular Medicine
Street address Wellcome Trust Centre for Human Genetics, Roosevelt Drive
City Oxford
ZIP/Postal code OX3 7BN
Country United Kingdom
 
Platforms (1)
GPL11533 [MoGene-1_1-st] Affymetrix Mouse Gene 1.1 ST Array [transcript (gene) version]
Samples (31)
GSM2870927 C57bl6/J_BCG_rep1
GSM2870928 C57bl6/J_Control_rep1
GSM2870929 C57bl6/J_BCG_rep2
Relations
BioProject PRJNA420498

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE107543_RAW.tar 122.2 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap