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Series GSE109046 Query DataSets for GSE109046
Status Public on Mar 14, 2018
Title Comparison of expression data from DLD-1 subpopulations III
Organism Homo sapiens
Experiment type SNP genotyping by SNP array
Genome variation profiling by SNP array
Summary The function of cell-cell contact for radiochemosensitivity is unclear. Here, we investigate the role of the E-cadherin/catenin complex proteins under more physiological three-dimensional (3D) cell culture conditions in a panel of CRC cell lines.
To gain further insights, differential gene expression was investigated in DLD-1 subpopulations showing distinct morphology and invasion in 3D collagen type I.
 
Overall design RNA extracted from DLD-1 subpopulations grown in 3D collagen type I (n=3 per subpopulation) was used for Affymetrix microarrays.
 
Contributor(s) Cordes N, Streichert T
Citation(s) 29484367
Submission date Jan 10, 2018
Last update date Jul 13, 2018
Contact name Thomas Streichert
Organization name University Medical Center Hamburg-Eppendorf
Department Institute For Clinical Chemistry / Central Laboratories
Street address Martinistr. 52, Campus Forschung N27, 2. OG
City Hamburg
ZIP/Postal code D-20246
Country Germany
 
Platforms (1)
GPL16131 [CytoScanHD_Array] Affymetrix CytoScan HD Array
Samples (6)
GSM2928441 DLD-1Δα-Cat_3D_96h_rep1
GSM2928442 DLD-1α-Cat_3D_96h_rep1
GSM2928443 DLD-1Δα-Cat_3D_96h_rep2
This SubSeries is part of SuperSeries:
GSE109047 Comparison of expression data from DLD-1 subpopulations
Relations
BioProject PRJNA429476

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE109046_RAW.tar 187.0 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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