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| Status |
Public on Apr 30, 2018 |
| Title |
Transcriptional profiling of sorted tumor cells from implanted T cell low and T cell high mouse pancreatic tumors |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Purpose: Use RNA-seq strategy to characterize the differentially expressed genes in T cell low and high mouse pancreatic tumors in order to identify factors contributing to the differential abundance of tumor infiltrating T cells.
Methods: Subcutaneously implanted T cell low and high pancreatic tumors were utilized for the preparation of RNA-seq libraries from sorted tumor cells.
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| |
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| Overall design |
Examination of differentially expressed genes between two biological groups (T cell low v.s. T cell high tumors).
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| Contributor(s) |
Stanger BZ, Vonderheide RH, Byrne KT, Li J |
| Citation(s) |
29958801 |
| Submission date |
Jan 31, 2018 |
| Last update date |
Jan 15, 2019 |
| Contact name |
Jinyang Li |
| E-mail(s) |
jli05@rockefeller.edu
|
| Phone |
2155885072
|
| Organization name |
The Rockefeller University
|
| Lab |
Daniel Mucida Lab
|
| Street address |
1230 York Ave
|
| City |
New York |
| State/province |
New York |
| ZIP/Postal code |
10065 |
| Country |
USA |
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| Platforms (1) |
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| Samples (39)
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| This SubSeries is part of SuperSeries: |
| GSE109972 |
RNA-seq and ATAC-seq profiling of T cell low and T cell high mouse pancreatic tumors |
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| Relations |
| BioProject |
PRJNA432363 |
| SRA |
SRP131877 |
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