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Status |
Public on Apr 30, 2018 |
Title |
Transcriptional profiling of bulk tumor samples from implanted T cell low and T cell high mouse pancreatic tumors |
Organism |
Mus musculus |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
Purpose: Use RNA-seq strategy to characterize the differentially expressed genes in T cell low and high mouse pancreatic tumors in order to identify factors contributing to the differential abundance of tumor infiltrating T cells. Methods: Subcutaneously implanted T cell low and high pancreatic tumors were utilized for the preparation of RNA-seq libraries from both bulk tumors.
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Overall design |
Examination of differentially expressed genes between two biological groups (T cell low v.s. T cell high tumors).
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Contributor(s) |
Stanger BZ, Vonderheide RH, Byrne KT, Li J |
Citation(s) |
29958801 |
Submission date |
Feb 01, 2018 |
Last update date |
Jul 10, 2019 |
Contact name |
Jinyang Li |
E-mail(s) |
jli05@rockefeller.edu
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Phone |
2155885072
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Organization name |
The Rockefeller University
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Lab |
Daniel Mucida Lab
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Street address |
1230 York Ave
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City |
New York |
State/province |
New York |
ZIP/Postal code |
10065 |
Country |
USA |
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Platforms (1) |
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Samples (37)
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This SubSeries is part of SuperSeries: |
GSE109972 |
RNA-seq and ATAC-seq profiling of T cell low and T cell high mouse pancreatic tumors |
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Relations |
BioProject |
PRJNA432499 |
SRA |
SRP131949 |