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| Status |
Public on Dec 29, 2020 |
| Title |
Epigenome analysis of normal PBMC and co-cultured PBMC with human colorectal adenocarcinoma cell lines using DNA microarray |
| Organism |
Homo sapiens |
| Experiment type |
Methylation profiling by genome tiling array
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| Summary |
The goal of this study is to investigate the secretion from human colorectal adenocarcinoma cell, which effect to peripheral blood mononuclear cell (PBMC).
Genome wide DNA methylation profiling of co-cultured PBMC without human colorectal adenocarcinoma cell lines and co-cultured PBMC with human colorectal adenocarcinoma cell lines were generated datas by microarray technology. The Illumina Infinium MethylationEPIC BeadChip was used to obtain DNA methylation profiles across approximately 850,000 CpGs in enhancer regions, gene bodies, promoters and CpG islands. Samples included duplicate PBMC of female control, duplicate PBMC of male control, duplicate PBMC of female were co-cultured with HT29, and duplicate PBMC of male were co-cultured with SW480.
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| Overall design |
Genome wide DNA methylation profiling of co-cultured PBMC without human colorectal adenocarcinoma cell lines and co-cultured PBMC with human colorectal adenocarcinoma cell lines.
Bisulphite converted DNA from the 8 samples were hybridized to the Illumina Infinium MethylationEPIC BeadChip.
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| Contributor(s) |
Boonsongserm P, Kitkumthorn N, Mutirangura A |
| Citation(s) |
31452782 |
| Submission date |
Feb 07, 2018 |
| Last update date |
Dec 29, 2020 |
| Contact name |
Nakarin Kitkumthorn |
| E-mail(s) |
nakarinkitkumthorn@gmail.com
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| Organization name |
Mahidol University
|
| Department |
Oral Biology
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| Street address |
Yothee road
|
| City |
Bangkok |
| ZIP/Postal code |
10400 |
| Country |
Thailand |
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| Platforms (1) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA433361 |
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