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Series GSE11037 Query DataSets for GSE11037
Status Public on Mar 23, 2009
Title Acute effects of particulate matter (EHC-93) inhalation in mice with chronic lung inflammation
Organism Mus musculus
Experiment type Expression profiling by array
Summary We examined the impact of chronic lung inflammation on the pulmonary transcriptional response to inhaled urban particles. Transcript levels were measured using high density microarrays in total RNA isolated from whole lungs of wildtype and TNF-α overexpressing mice exposed by inhalation to particulate matter and euthanized immediately or 24 h post-exposure.
Keywords: Toxicology, disease state analysis, stress response
 
Overall design Transgenic SP-C/TNF-α mice and their wildtype littermates were exposed by inhalation to particulate matter (0, 42 mg/m3 EHC-93) for 4 h and euthanized immediately or 24 h post-exposure (n=5 per treatment per time point, 40 animals total). Agilent 22K oligonucleotide microarrays were used to examine transcript levels in whole lung RNA. Stratagene Universal Mouse RNA was used as a reference.
 
Contributor(s) Thomson EM, Williams A, Yauk CL, Vincent R
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Apr 03, 2008
Last update date Dec 06, 2012
Contact name Andrew Williams
Organization name Health Canada
Street address 50 Columbine
City Ottawa
State/province ON
ZIP/Postal code K1A OK9
Country Canada
 
Platforms (1)
GPL891 Agilent-011978 Mouse Microarray G4121A (Feature Number version)
Samples (40)
GSM278949 TNF Sample 1 WT T0 Control
GSM278950 TNF Sample 2 TNF T0 Exposed
GSM278951 TNF Sample 3 TNF T0 Control
Relations
BioProject PRJNA107131

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE11037_RAW.tar 33.0 Mb (http)(custom) TAR (of TXT)
GSE11037_TNF_Genotype_Common.txt 355.9 Kb (ftp)(http) TXT
GSE11037_TNF_Genotype_Total.txt 672.6 Kb (ftp)(http) TXT
GSE11037_TNF_Nose_only_Stress_Common_to_Wildtype_and_TNF_Table_1.txt 2.6 Kb (ftp)(http) TXT
GSE11037_TNF_Nose_only_Stress_TNF_Unique_Supplemental_Table_2.txt 413 b (ftp)(http) TXT
GSE11037_TNF_Nose_only_Stress_Wildtype_Unique_Supplemental_Table_1.txt 19.1 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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