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GEO accession:
Series GSE111924
Query DataSets for GSE111924
Status
Public on Nov 23, 2018
Title
Osmostress induced changes of chromatin architecture and transcription in mammalian cells
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Other
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
30523037
Submission date
Mar 15, 2018
Last update date
Mar 27, 2019
Contact name
Francesc Posas
Organization name
Cell Signaling Group, Universitat Pompeu Fabra
Street address
Dr. Aiguader 88
City
Barcelona
ZIP/Postal code
08003
Country
Spain
Platforms (3)
GPL15520
Illumina MiSeq (Homo sapiens)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
Samples (59)
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GSM3044578
RNA-seq – no stress (batch 1)
GSM3044579
RNA-seq – no stress (batch 2)
GSM3044580
RNA-seq – 1h 110 mM NaCl (batch 1)
GSM3044581
RNA-seq – 1h 110 mM NaCl (batch 2)
GSM3044582
RNA-seq – 3h 110 mM NaCl (batch 1)
GSM3044583
RNA-seq – 3h 110 mM NaCl (batch 2)
GSM3044584
RNA-seq – 6h 110 mM NaCl (batch 1)
GSM3044585
RNA-seq – 6h 110 mM NaCl (batch 2)
GSM3044586
HiC – no stress (batch 1)
GSM3044587
HiC – 1h 110 mM NaCl (batch 1)
GSM3044588
HiC – no stress (batch 2)
GSM3044589
HiC – 1h 110 mM NaCl (batch 2)
GSM3044590
HiC – no stress (batch 3)
GSM3044591
HiC – no stress + triptolide (batch 3)
GSM3044592
HiC – 1h 110 mM NaCl (batch 3)
GSM3044593
HiC – 1h 110 mM NaCl + triptolide (batch 3)
GSM3044594
HiC – 1h 110 mM NaCl + recovery (batch 3)
GSM3044595
HiC – 1h 110 mM NaCl + recovery + triptolide (batch 3)
GSM3045107
CTCF - no stress - IP rep1
GSM3045108
CTCF – 7.5min 110 mM NaCl - IP rep1
GSM3045109
CTCF – 1h 110 mM NaCl - IP rep1
GSM3045110
CTCF – no stress - IP rep2
GSM3045111
CTCF – 7.5min 110 mM NaCl - IP rep2
GSM3045112
CTCF – 30min 110 mM NaCl - IP rep2
GSM3045113
CTCF – 1h 110 mM NaCl - IP rep2
GSM3045114
CTCF – no stress - input rep1
GSM3045115
CTCF – 7.5min 110 mM NaCl - input rep1
GSM3045116
CTCF – 1h 110 mM NaCl - input rep1
GSM3045117
CTCF – no stress - input rep2
GSM3045118
CTCF – 7.5min 110 mM NaCl - input rep2
GSM3045119
CTCF – 30min 110 mM NaCl - input rep1
GSM3045120
CTCF – 1h 110 mM NaCl - input rep2
GSM3045121
Pol II - no stress - IP rep1
GSM3045122
Pol II – no stress - IP rep2
GSM3045123
Pol II – 1h 110 mM NaCl - IP rep1
GSM3045124
Pol II – 1h 110 mM NaCl - IP rep2
GSM3045125
Pol II – no stress - input rep1
GSM3045126
Pol II – no stress - input rep2
GSM3045127
Pol II – 1h 110 mM NaCl - input rep1
GSM3045128
Pol II – 1h 110 mM NaCl - input rep2
GSM3045129
RAD21 – no stress - IP rep1
GSM3045130
RAD21 – 1h 110 mM NaCl - IP rep1
GSM3045131
RAD21 – 1h 110 mM NaCl + 1h isotonic - IP rep1
GSM3045132
RAD21 – no stress - IP rep2
GSM3045133
RAD21 – 1h 110 mM NaCl - IP rep2
GSM3045134
RAD21 – 1h 110 mM NaCl + 1h isotonic - IP rep2
GSM3045135
RAD21 – input
GSM3415544
CTCF – no stress
GSM3415545
CTCF – no stress + triptolide pre-treatment
GSM3415546
CTCF – 1h 110 mM NaCl
GSM3415547
CTCF – 1h 110 mM NaCl + triptolide
GSM3415548
CTCF – 1h 110 mM NaCl + 1h isotonic
GSM3415549
CTCF – 1h 110 mM NaCl + 1h isotonic + triptolide pre-treatment
GSM3415550
RAD21 – no stress
GSM3415551
RAD21 – no stress + triptolide
GSM3415552
RAD21 – 1h 110 mM NaCl
GSM3415553
RAD21 – 1h 110 mM NaCl + triptolide
GSM3415554
RAD21 – 1h 110 mM NaCl + 1h isotonic
GSM3415555
RAD21 – 1h 110 mM NaCl + 1h isotonic + triptolide pre-treatment
This SuperSeries is composed of the following SubSeries:
GSE111904
Osmostress induced changes of chromatin architecture and transcription in mammalian cells [RNA-Seq, HiC]
GSE111923
Osmostress induced changes of chromatin architecture and transcription in mammalian cells [ChIP-Seq]
Relations
BioProject
PRJNA438550
Download family
Format
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Supplementary file
Size
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File type/resource
GSE111924_RAW.tar
615.1 Mb
(http)
(custom)
TAR (of BROADPEAK, NARROWPEAK, TSV)
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