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Series GSE112057 Query DataSets for GSE112057
Status Public on May 29, 2018
Title Whole Blood Transcriptome Profiling in Juvenile Idiopathic Arthritis and Inflammatory Bowel Disease
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We report whole blood gene expression of 12 healthy controls and 190 patients with either oligoarticular (n=43), polyarticular (n=46), or systemic JIA (n=26), or Crohn's disease (n=60) and ulcerative colitis (n=15). The subtypes of JIA are characterized by a gradient of differential gene expression ranging from controls to oligoJIA, polyJIA, sJIA, and IBD.
 
Overall design Whole blood samples were obtained from JIA patients age <17 years. Transcriptome profiling was performed with RNA-Seq.
 
Contributor(s) Mo A, Marigorta UM, Kugathasan S, Prahalad S, Gibson G
Citation(s) 29950172
Submission date Mar 20, 2018
Last update date Mar 27, 2019
Contact name Angela Mo
E-mail amo3@gatech.edu
Organization name Georgia Institute of Technology
Department School of Biological Sciences
Street address 950 Atlantic Drive
City Atlanta
State/province GA
ZIP/Postal code 30332
Country USA
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (202)
GSM3056394 Sample001_Crohn's Disease
GSM3056395 Sample002_Crohn's Disease
GSM3056396 Sample003_Crohn's Disease
Relations
BioProject PRJNA439192
SRA SRP136057

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE112057_Normalized_dataset.txt.gz 5.0 Mb (ftp)(http) TXT
GSE112057_RawCounts_dataset.txt.gz 5.2 Mb (ftp)(http) TXT
Raw data are available in SRA
Processed data are available on Series record

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