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Series GSE113181 Query DataSets for GSE113181
Status Public on Apr 17, 2018
Title Stabilizing Heterochromatin by DGCR8 Alleviates Senescence and Osteoarthritis (ChIP-Seq)
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary DiGeorge syndrome critical region 8 (DGCR8) is a critical component of the canonical microprocessor complex for microRNA biogenesis. However, the non-canonical functions of DGCR8 have not been studied. Here, we demonstrate that DGCR8 plays an important role in maintaining heterochromatin organization and preventing aging. An N-terminal-truncated version of DGCR8 (DR8dex2) accelerated senescence in human mesenchymal stem cells (hMSCs) independent of its miRNA-processing activity, which is mediated by its C-terminal domain. Further studies revealed that DGCR8 maintained heterochromatin organization by interacting with the nuclear envelope protein Lamin B1, and heterochromatin-associated proteins, KAP1 and HP1gamma Overexpression of any of these proteins, including DGCR8, reversed premature senescent phenotypes in DR8dex2 hMSCs. Finally, DGCR8 was downregulated in pathological and naturally aged hMSCs, whereas DGCR8 overexpression alleviated hMSC aging and osteoarthritis in mice. Taken together, these analyses uncovered a novel, miRNA-independent role for DGCR8 in maintaining heterochromatin organization and preventing senescence. DGCR8 may therefore represent a new therapeutic target for alleviating human aging-related disorders.
 
Overall design H3K9me3 ChIP-seq profiles of DR8dex2 and WT hMSCs
 
Contributor(s) Liu G
Citation(s) 31350386
Submission date Apr 16, 2018
Last update date Aug 06, 2019
Contact name Zunpeng Liu
E-mail(s) zunpengliu@163.com
Phone +86 15510715055
Organization name State Key Laboratory of Stem Cell and Reproductive Biology
Department Institute of Zoology, Chinese Academy of Sciences
Lab Jing Qu
Street address Beichen West Road
City Beijing
ZIP/Postal code 100101
Country China
 
Platforms (1)
GPL20795 HiSeq X Ten (Homo sapiens)
Samples (5)
GSM3099223 ChIP-seq_WT_ rep1
GSM3099224 ChIP-seq_WT_ rep2
GSM3099225 ChIP-seq_DR8dex2_rep1
Relations
BioProject PRJNA450388
SRA SRP140508

Download family Format
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Supplementary file Size Download File type/resource
GSE113181_DR8dex2_peaks.xls.gz 324.9 Kb (ftp)(http) XLS
GSE113181_WT_peaks.xls.gz 1.2 Mb (ftp)(http) XLS
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Raw data are available in SRA
Processed data are available on Series record

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