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Series GSE113483 Query DataSets for GSE113483
Status Public on Jun 15, 2019
Title Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 31367015
Submission date Apr 20, 2018
Last update date Apr 08, 2021
Contact name Yin Shen
E-mail(s) Yin.Shen@ucsf.edu
Phone 4155023403
Organization name UCSF
Department Department of Neurology
Lab Shen Lab
Street address 513 Parnassus Ave
City SAN FRANCISCO
State/province CALIFORNIA
ZIP/Postal code 94143-0410
Country USA
 
Platforms (2)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (39)
GSM3106826 ATAC-seq_iPSC-induced excitatory neurons_rep1
GSM3106827 ATAC-seq_iPSC-induced excitatory neurons_rep2
GSM3106830 ATAC-seq_human primary fetal astrocytes_rep1
This SuperSeries is composed of the following SubSeries:
GSE113480 Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes [ATAC-seq]
GSE113481 Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes [PCHiC]
GSE113482 Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes [RNA-Seq]
Relations
BioProject PRJNA451215

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE113483_RAW.tar 7.8 Gb (http)(custom) TAR (of BIGWIG, TXT)
SRA Run SelectorHelp

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