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Series GSE113550 Query DataSets for GSE113550
Status Public on Aug 10, 2018
Title Specific Oxylipins Enhance Vertebrate Hematopoiesis via the Receptor GPR132
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Epoxyeicosatrienoic acids (EETs) are endogenous lipid signaling molecules with cardioprotective and vasodilatory actions. We recently showed that exogenous addition of 11,12-EET enhances hematopoietic induction and engraftment in mice and zebrafish. EETs are known to signal via a G-protein coupled receptor(s), but no specific EET receptor has been identified. Identification of an EET receptor would enable genetic interrogation of the EET signaling pathway and perhaps clinical use of this molecule. We developed a bioinformatic approach to identify the EET receptor based on the expression of GPCRs in cell lines with differential responses to EETs. We found 10 candidate EET receptors that are commonly expressed in three EET-responsive human cell lines, but not expressed in an EET-unresponsive line. Of these candidates, only GPR132 showed EET-responsiveness in vitro using a luminescence-based assay for β-arrestin recruitment. Knockdown of zebrafish gpr132b prevented EET-induced hematopoiesis, and marrow from GPR132 knockout mice showed decreased long-term engraftment capability. GPR132 has affinity for certain fatty acids in vitro, and we found that these same fatty acids enhance hematopoietic stem cell specification in the zebrafish. We conducted structure-activity relationship analyses using both in vitro and in vivo assays on diverse medium chain fatty acids. Certain oxygenated, unsaturated free fatty acids showed high activation of GPR132, while unoxygenated or saturated fatty acids had lower activity. Absence of the carboxylic acid moiety prevented activity, suggesting that this moiety is required for receptor activation. GPR132 responds to a select panel of polyunsaturated, oxygenated fatty acids to enhance both embryonic and adult hematopoiesis.
 
Overall design To identify potential EET receptors, we performed RNAseq on 3 EET-binding cell lines and one non-binding cell lines, then identified GPCRs expressed in common in the EET-binding lines but missing from the non-binding line.
 
Contributor(s) Lahvic JL, Yang S
Citation(s) 30139917
Submission date Apr 23, 2018
Last update date Jan 08, 2020
Contact name Leonard Zon
E-mail(s) zon@enders.tch.harvard.edu
Organization name Boston Children's Hospital
Department Oncology/Hematology
Street address 1 Blackfan Circle
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platforms (2)
GPL9052 Illumina Genome Analyzer (Homo sapiens)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (8)
GSM3108991 U937_1
GSM3108992 U937_2
GSM3108993 EaHy_1
Relations
BioProject PRJNA451492
SRA SRP142336

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE113550_processed.FPKM.xlsx 2.0 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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