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| Status |
Public on Jun 01, 2018 |
| Title |
Transcriptome analysis of paired luminal breast tumor and para-carcinoma tissues |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
|
| Summary |
With stringent filtering criteria (fold change>2, p<0.001 and False Discovery Rate (FDR) <0.01), we identified 133 lncRNAs and 370 mRNAs that were the most highly differentially expressed. Of all the lncRNAs, 61 were upregulated, and 72 were downregulated.
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| Overall design |
Twenty one paired luminal breast tumor (ER+) and para-carcinoma RNA samples extracted from fresh frozen tissues were analyzed using the Affymetrix Human Transcriptome 2.0 Arrays. Array data was processed by Partak genomic suite software.
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| Contributor(s) |
Sun W, Xu X, Jiang Y, Jin X, Zhou P, Liu Y, Shao Z |
| Citation(s) |
30720865 |
| Submission date |
May 31, 2018 |
| Last update date |
Mar 22, 2020 |
| Contact name |
Wei Sun |
| E-mail(s) |
haidao102488@126.com
|
| Phone |
86-15901947570
|
| Organization name |
Fudan University Shanghai Cancer Center
|
| Department |
Department of Musculoskeletal Surgery
|
| Street address |
Dongan Road 270
|
| City |
Shanghai |
| ZIP/Postal code |
200032 |
| Country |
China |
| |
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| Platforms (1) |
| GPL17586 |
[HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version] |
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| Samples (42)
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| Relations |
| BioProject |
PRJNA473920 |
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