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Series GSE115666 Query DataSets for GSE115666
Status Public on May 21, 2019
Title Interrupted reprogramming into induced pluripotent stem cells does not rejuvenate human mesenchymal stromal cells
Organism Homo sapiens
Experiment type SNP genotyping by SNP array
Summary Replicative senescence hampers application of mesenchymal stromal cells (MSCs) because it limits culture expansion, impairs differentiation potential, and hinders reliable standardization of cell products. MSCs can be rejuvenated by reprogramming into induced pluripotent stem cells (iPSCs), which is associated with complete erasure of age- and senescence-associated DNA methylation (DNAm) patterns. However, this process is also associated with erasure of cell-type and tissue-specific epigenetic characteristics that are not recapitulated upon re-differentiation towards MSCs. In this study, we therefore followed the hypothesis that overexpression of pluripotency factors under culture conditions that do not allow full reprogramming might reset senescence-associated changes without entering a pluripotent state. MSCs were transfected with episomal plasmids and either successfully reprogrammed into iPSCs or cultured in different media with continuous passaging every week. Overexpression of pluripotency factors without reprogramming did neither prolong culture expansion nor ameliorate molecular and epigenetic hallmarks of senescence. Notably, transfection resulted in immortalization of one cell preparation with gain of large parts of the long arm of chromosome 1. Taken together, premature termination of reprogramming does not result in rejuvenation of MSCs and harbours the risk of transformation. This approach is therefore not suitable to rejuvenate cells for cellular therapy.
 
Overall design The Affymetrix CytoScan® HD Array was applied on DNA extracted from transfected human MSCs of donor 2 at passage 4 and 12 because cells displayed altered morphology and immunophenotype at late passage. Consequently, we performed copy number variation (CNV) analysis to look for possible contaminations with other cell lines or chromosomal aberrations at late passage.
 
Contributor(s) Goebel C, Goetzke R, Eggermann T, Wagner W
Citation(s) 30076334
Submission date Jun 12, 2018
Last update date May 21, 2019
Contact name Wolfgang Wagner
E-mail(s) wwagner@ukaachen.de
Phone +49 241 8088611
Organization name RWTH Aachen University
Department Helmholtz Institute for Biomedical Engineering
Lab Stem Cell Biology and Cellular Engineering
Street address Pauwelsstrasse 20
City Aachen
ZIP/Postal code 52074
Country Germany
 
Platforms (1)
GPL16131 [CytoScanHD_Array] Affymetrix CytoScan HD Array
Samples (2)
GSM3186894 BM-MSCs_donor 2_transfected_hPL-medium_P4
GSM3186895 BM-MSCs_donor 2_transfected_hPL-medium_P12
Relations
BioProject PRJNA475735

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE115666_RAW.tar 62.1 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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