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GEO accession:
Series GSE117173
Query DataSets for GSE117173
Status
Public on Aug 30, 2018
Title
Chromatin-associated factors Dppa2 and Dppa4 guide epigenetic remodeling during reprogramming to pluripotency
Organism
Mus musculus
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
30146411
Submission date
Jul 16, 2018
Last update date
Mar 21, 2019
Contact name
Zheng Wang
E-mail(s)
zheng.wang@yale.edu
Organization name
YALE UNIVERSITY
Department
genetics
Street address
10 amistad street, yale stem cell center, yale stem cell center
City
NEW HAVEN
State/province
Connecticut
ZIP/Postal code
06520
Country
USA
Platforms (1)
GPL17021
Illumina HiSeq 2500 (Mus musculus)
Samples (73)
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More...
GSM3272826
MEF H3K27me3_ChIP
GSM3272827
MEF H3K4me1_ChIP
GSM3272828
MEF H3K4me3_ChIP
GSM3272829
MEF_Control_OE_Dppa2_ChIP
GSM3272830
MEF_Control_OE_Dppa4_ChIP
GSM3272831
MEF_Control_OE_Input_ChIP
GSM3272832
MEF_Dppa2_OE_Dppa2_ChIP
GSM3272833
MEF_Dppa2_OE_Input_ChIP
GSM3272834
MEF_Dppa2-4_OE_Dppa2_ChIP
GSM3272835
MEF_Dppa2-4_OE_Dppa4_ChIP
GSM3272836
MEF_Dppa2-4_OE_Input_ChIP
GSM3272837
MEF_Dppa4_OE_Dppa4_ChIP
GSM3272838
MEF_Dppa4_OE_Input_ChIP
GSM3272839
MEF_H3K27Ac_ChIP
GSM3272840
MEF_Input_ChIP
GSM3272841
mES H3K27me3_ChIP
GSM3272842
mES_Dppa2_ChIP
GSM3272843
mES_Dppa4_ChIP
GSM3272844
mES_H3K27Ac_ChIP
GSM3272845
mES_H3K4me1_ChIP
GSM3272846
mES_H3K4me3_ChIP
GSM3272847
mES_Input_ChIP
GSM3272848
R_Control_OE_Dppa2_ChIP
GSM3272849
R_Control_OE_Dppa4_ChIP
GSM3272850
R_Control_OE_H3K27Ac_ChIP
GSM3272851
R_Control_OE_H3K27me3_ChIP
GSM3272852
R_Control_OE_H3K4me1_ChIP
GSM3272853
R_Control_OE_H3K4me3_ChIP
GSM3272854
R_Control_OE_H3K9me3_ChIP
GSM3272855
R_Control_OE_InputP_ChIP
GSM3272856
R_Dppa2-4_OE_Dppa2_ChIP
GSM3272857
R_Dppa2-4_OE_Dppa4_ChIP
GSM3272858
R_Dppa2-4_OE_H3K27Ac_ChIP
GSM3272859
R_Dppa2-4_OE_H3K27me3_ChIP
GSM3272860
R_Dppa2-4_OE_H3K4me1_ChIP
GSM3272861
R_Dppa2-4_OE_H3K4me3_ChIP
GSM3272862
R_Dppa2-4_OE_H3K9me3_ChIP
GSM3272863
R_Dppa2-4_OE_InputP_ChIP
GSM3272864
R_Control_OE_InputS_ChIP
GSM3272865
R_Dppa2-4_OE_InputS_ChIP
GSM3272866
Control_OE_D2_rtTA-MEF
GSM3272867
Control_OE_D2_Thy1minusSSEA1minus
GSM3272868
Control_OE_D2_Thy1plusSSEA1minus
GSM3272869
Control_OE_D4_Thy1minusSSEA1minus
GSM3272870
Control_OE_D4_Thy1plusSSEA1minus
GSM3272871
Control_OE_D8_GFPminus_Thy1minus_SSEA1minus
GSM3272872
Control_OE_D8_GFPminus_Thy1minus_SSEA1plus
GSM3272873
Control_OE_D8_GFPminus_Thy1plus_SSEA1minus
GSM3272874
Control_OE_D11_GFPminus_Thy1minus_SSEA1minus
GSM3272875
Control_OE_D11_GFPminus_Thy1minus_SSEA1plus
GSM3272876
Control_OE_D11_GFPminus_Thy1plus_SSEA1minus
GSM3272877
Control_OE_D11_GFPplus
GSM3272878
Control_OE_D14_GFPminus_Thy1minus_SSEA1plus
GSM3272879
Control_OE_D14_GFPminus_Thy1plus_SSEA1minus
GSM3272880
Control_OE_D14_GFPplus
GSM3272881
Dppa2/4_OE_D2_rtTA-MEF
GSM3272882
Dppa2/4_OE_D2_Thy1minusSSEA1minus
GSM3272883
Dppa2/4_OE_D2_Thy1plusSSEA1minus
GSM3272884
Dppa2/4_OE_D2_Thy1plusSSEA1plus
GSM3272885
Dppa2/4_OE_D4_Thy1minusSSEA1minus
GSM3272886
Dppa2/4_OE_D4_Thy1plusSSEA1minus
GSM3272887
Dppa2/4_OE_D4_Thy1plusSSEA1plus
GSM3272888
Dppa2/4_OE_D8_GFPminus_Thy1minus_SSEA1minus
GSM3272889
Dppa2/4_OE_D8_GFPminus_Thy1minus_SSEA1plus
GSM3272890
Dppa2/4_OE_D8_GFPminus_Thy1plus_SSEA1minus
GSM3272891
Dppa2/4_OE_D8_GFPplus
GSM3272892
Dppa2/4_OE_D11_GFPminus_Thy1minus_SSEA1minus
GSM3272893
Dppa2/4_OE_D11_GFPminus_Thy1minus_SSEA1plus
GSM3272894
Dppa2/4_OE_D11_GFPplus
GSM3272895
Dppa2/4_OE_D14_GFPminus_Thyminus_SSEA1minus
GSM3272896
Dppa2/4_OE_D14_GFPminus_Thyminus_SSEA1plus
GSM3272897
Dppa2/4_OE_D14_GFPminus_Thyplus_SSEA1minus
GSM3272898
Dppa2/4_OE_D14_GFPplus
This SuperSeries is composed of the following SubSeries:
GSE117171
Chromatin-associated factors Dppa2 and Dppa4 guide epigenetic remodeling during reprogramming to pluripotency (ChIP-seq)
GSE117172
Chromatin-associated factors Dppa2 and Dppa4 guide epigenetic remodeling during reprogramming to pluripotency (RNA-seq)
Relations
BioProject
PRJNA481338
Download family
Format
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MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE117173_RAW.tar
28.1 Mb
(http)
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TAR (of NARROWPEAK)
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