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| Status |
Public on Jul 18, 2018 |
| Title |
Transcriptome profiling identified a 3-lncRNA regulatory network in transthyretin against glucose induced hRECs dysfunction |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Transcriptome of human retinal endothelial cells (hRECs) treated with low glucose (LG), high glucose (HG) or high glucose with 4 uM TTR (HG+TTR) were conducted. Differentially expressed lncRNAs, mRNAs and TTR related lncRNAs and mRNA were acquired for further analysis. Functional annotation and enrichment including KEGG pathway, GO and GSEA were applied to analyze TTR regulated pathway and process. WGCNA analysis was implemented to obtain hub modules and genes. LncRNA-mRNA regulatory network were constructed based on cis, trans and ceRNA acting mode.
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| Overall design |
Examination of Human retinal endothelial cells (hRECs) treated with low glucose (LG), high glucose (HG), or high glucose with 4 uM TTR (HG+TTR)
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| Contributor(s) |
Shao J, Yao Y |
| Citation(s) |
31615521 |
| Submission date |
Jul 17, 2018 |
| Last update date |
Oct 29, 2019 |
| Contact name |
Yunbin Zhang |
| Organization name |
Chinese Academy of Sciences
|
| Department |
Shanghai Institute of Biochemistry and Cell Biology
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| Street address |
No. 320, Yueyang Road, Xuhui District
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| City |
Shanghai |
| ZIP/Postal code |
200031 |
| Country |
China |
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| Platforms (1) |
| GPL21290 |
Illumina HiSeq 3000 (Homo sapiens) |
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| Samples (9)
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| Relations |
| BioProject |
PRJNA481517 |
| SRA |
SRP154189 |
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