|
Status |
Public on Jun 04, 2019 |
Title |
Fucntional genetic variants mediate their regulatory effects through altered transcription factor binding. [Bisulfite-Seq] |
Organism |
Homo sapiens |
Experiment type |
Methylation profiling by high throughput sequencing
|
Summary |
The extensive molecular characterization of the transcriptional regulatory landscape within the LCLs of a 3-generation, 17-member kindred was performed to allow for the identification of functional variants. A variant associated with changes in multiple molecular phenotypes was selected for validation through precise CRISPR/Cas9 editing. Edited clones were subsequently tested for reconstitution of function through CRISPR/dCas9 targeted TF activation.
|
|
|
Overall design |
DNA methylation within a 3-generation,17-member kindred were assayed using a strand sensitive library construction
|
|
|
Contributor(s) |
Johnston AD, Simoes-Pires CA, Thompson TV, Suzuki M, Greally JM |
Citation(s) |
31375681, 31428700 |
Submission date |
Jul 23, 2018 |
Last update date |
Aug 27, 2019 |
Contact name |
Andrew Johnston |
E-mail(s) |
Andrew.Johnston@med.einstein.yu.edu
|
Organization name |
Albert Einstein College of Medicine
|
Department |
Genetics
|
Lab |
Price 314
|
Street address |
1301 Morris Park Avenue
|
City |
Bronx |
State/province |
NY |
ZIP/Postal code |
10461 |
Country |
USA |
|
|
Platforms (1) |
|
Samples (17)
|
|
This SubSeries is part of SuperSeries: |
GSE117576 |
Fucntional genetic variants mediate their regulatory effects through altered transcription factor binding. |
|
Relations |
BioProject |
PRJNA482544 |
SRA |
SRP154980 |