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Series GSE117707 Query DataSets for GSE117707
Status Public on Oct 22, 2019
Title ‘Sertoli cell-only’ phenotype and single-cell RNA-seq define PRAMEF12 as a germline-specific factor for male stem cell maintenance and differentiation [scRNA-seq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Spermatogonial stem cells (SSCs) have the dual capacity to self-renew and differentiate into progenitor spermatogonia that develop into mature spermatozoa. Here, we document that preferentially expressed antigen of melanoma family member 12 (PRAMEF12) is a key regulator of germline stem cell maintenance and differentiation. In male mice, genetic ablation of Pramef12 arrests spermatogenesis and results in sterility which can be rescued by transgenic expression of Pramef12. Pramef12 deficiency globally decreases expression of spermatogenic-related genes and single-cell transcriptional analysis of male germline cells identifies four spermatogonial states. In the absence of Pramef12 expression, there are fewer spermatogonial stem cells which exhibit lower expression of SSC maintenance-related genes and are defective in their ability to differentiate. The disruption of the first wave of spermatogenesis in junenile mice results in agametic seminiferous tubules. These observations mimic a ‘Sertoli cell-only’ phenotype in humans and may have translational implications for reproductive medicine.
 
Overall design Single-cell RNA-seq was performed using P7 testicular cells from control and knockout mice to identify different subpopulations. Re-clustering of germ cells was performed to determine the germ cell distribution changes in knockout mice.
 
Contributor(s) Wang Z, Xu X, Li J, Palmer C, Dean J
Citation(s) 31729367
Submission date Jul 26, 2018
Last update date Nov 25, 2019
Contact name Cameron Palmer
E-mail(s) palmercd@nih.gov
Organization name National Institutes of Health
Department National Institute of Diabetes and Digestive and Kidney Diseases
Lab Laboratory of Cellular and Developmental Biology
Street address 50 South Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL21493 Illumina HiSeq 3000 (Mus musculus)
Samples (2)
GSM3734123 ScRNA-seq Control
GSM3734124 ScRNA-seq KO
This SubSeries is part of SuperSeries:
GSE117708 ‘Sertoli cell-only’ phenotype and single-cell RNA-seq define PRAMEF12 as a germline-specific factor for male stem cell maintenance and differentiation
Relations
BioProject PRJNA483009
SRA SRP155368

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Supplementary file Size Download File type/resource
GSE117707_RAW.tar 89.3 Mb (http)(custom) TAR (of TAR)
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Raw data are available in SRA
Processed data provided as supplementary file

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