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Series GSE118192 Query DataSets for GSE118192
Status Public on Mar 13, 2020
Title MOF directs erythroid fate during hematopoiesis via RUNX1-GFI1b feedforward control (ChIP-Seq)
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary The balance between self-renewal and differentiation of hematopoietic stem cells (HSCs) is orchestrated by the combinatorial function of transcription factors and epigenetic regulators. Here, we report that the H4K16 acetyl-transferase MOF regulates chromatin accessibility and hematopoietic gene expression during erythroid commitment. Mof expression is controlled via a transcriptional feedforward pathway involving Runx1 and Gfi1b, which is crucial for the erythroid lineage bias. Single-cell RNA-seq of HSCs revealed that Mof haploinsufficient mice accumulate an otherwise rare HSC subset, indicating impaired differentiation.We propose that an intricate transcription factor network ensures dynamic chromatin targeting by MOF, which defines an essential epigenetic node regulating HSC plasticity, identity and differentiation. We propose that an intricate transcription factor network ensures dynamic chromatin targeting by MOF, which defines an essential epigenetic node regulating HSC plasticity, identity and differentiation. We propose that an intricate transcription factor network ensures dynamic chromatin targeting by MOF, which defines an essential epigenetic node regulating HSC plasticity, identity and differentiation. We propose that an intricate transcription factor network ensures dynamic chromatin targeting by MOF, which defines an essential epigenetic node regulating HSC plasticity, identity and differentiation.
 
Overall design Examination of MOF, H4K16ac and GATA-1 Genome-wide occupancy.
Web link https://0-doi-org.brum.beds.ac.uk/10.1126/sciadv.aaz4815
 
Contributor(s) Akhtar A, Rodrigues CP
Citation(s) 32671208
Submission date Aug 06, 2018
Last update date Jul 20, 2020
Contact name Asifa Akhtar
E-mail(s) akhtarlab_data@ie-freiburg.mpg.de
Organization name Max Planck Institute of Immunobiology and Epigenetics
Department Chromatin Regulation
Lab Akhtar Lab
Street address Stuebeweg 51
City Freiburg
ZIP/Postal code 79108
Country Germany
 
Platforms (1)
GPL9185 Illumina Genome Analyzer (Mus musculus)
Samples (10)
GSM3320453 H4K16ac_ChIP-seq_rep1
GSM3320454 H4K16ac_ChIP-seq_rep2
GSM3320455 MOF_ChIP_seq_rep1
This SubSeries is part of SuperSeries:
GSE107154 Decoding the regulatory circuit by epigenetic regulator MOF in haematopoiesis
Relations
BioProject PRJNA484805
SRA SRP156499

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE118192_RAW.tar 1.8 Gb (http)(custom) TAR (of BIGWIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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