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| Status |
Public on Aug 11, 2018 |
| Title |
Abundantly present miRNAs in milk-derived extracellular vesicles are conserved between mammals |
| Organisms |
Homo sapiens; Sus scrofa |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
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| Summary |
Mammalian milk is not only a source of nutrition for the newborn, but also contains various components that regulate further development. For instance, milk is an abundant source of microRNAs (miRNAs), which are evolutionary conserved small non-coding RNAs that are involved in post-transcriptional regulation of target mRNA. MiRNAs present in milk can occur in extracellular vesicles (EV), which are nanosized membrane vesicles released by many cell types as a means of intercellular communication. The membrane of EV protects enclosed miRNAs from degradation and harbors molecules that allow specific targeting to recipient cells. Although several studies have investigated the miRNA content in milk EV from individual species, little is known about the evolutionary conserved nature of EV-associated miRNAs among different species. In this study, we profiled the miRNA content of purified EV from human and porcine milk. These data were compared to published studies on EV from human, cow, porcine and panda milk to assess the overlap in the top 20 most abundant miRNAs. Interestingly, several abundant miRNAs were shared between species (e.g. let-7 family members let-7a, let-7b, let-7f, and miR-148a). Moreover, these miRNAs have been implicated in immune-related functions and regulation of cell growth and signal transduction. The conservation of these miRNA among species, not only in their sequence homology , but also in their incorporation in milk EV of several species, suggests that they are evolutionarily selected to regulate cell function in the newborn.
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| Overall design |
EV were purified from a pool of 4 human milk donors, and from the milk of two pigs. RNA was isolated from these EV, treated with DNAse and subjected to NebNext (human) or TruSeq (pig) library preparation.
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| Contributor(s) |
van Herwijnen M, Wauben M |
| Citation(s) |
30280098 |
| Submission date |
Aug 10, 2018 |
| Last update date |
Jan 25, 2019 |
| Contact name |
Martijn van Herwijnen |
| E-mail(s) |
m.j.c.vanherwijnen@uu.nl
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| Organization name |
Utrecht University
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| Department |
Biochemistry & Cell Biology
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| Street address |
Yalelaan 2
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| City |
Utrecht |
| ZIP/Postal code |
3584 CM |
| Country |
Netherlands |
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| Platforms (2) |
| GPL15520 |
Illumina MiSeq (Homo sapiens) |
| GPL20983 |
Illumina NextSeq 500 (Sus scrofa) |
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| Samples (3) |
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| Relations |
| BioProject |
PRJNA485492 |
| SRA |
SRP157075 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE118409_Count_tables.xlsx |
26.1 Kb |
(ftp)(http) |
XLSX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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