NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE118926 Query DataSets for GSE118926
Status Public on Dec 01, 2018
Title A versatile mouse model of epitope-tagged histone H3.3 to study epigenome dynamics
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary H3.3 knock-in mice serve as a useful experimental model to study epigenome regulation in development and in various adult cells in vivo.
 
Overall design ChIP-Seq of epitope-tagged(HA) H3.3 and RNA-seq of untreated or IFNB-treated MEFs.
 
Contributor(s) Chen C, Bachu M
Citation(s) 30552116
Submission date Aug 22, 2018
Last update date Mar 19, 2019
Contact name Mahesh Bachu
E-mail(s) bmahesh07@gmail.com, bachum@hss.edu
Organization name Hospital For Special Surgery
Street address 535 E 70th St 6th Floor
City New York
State/province New York
ZIP/Postal code 10021
Country USA
 
Platforms (2)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL21626 NextSeq 550 (Mus musculus)
Samples (8)
GSM3351328 MEF-H3f3b-HA-NT
GSM3351329 MEF-H3f3b-HA-IFNB
GSM3445511 NT-Input
Relations
BioProject PRJNA487345
SRA SRP158613

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE118926_RAW.tar 677.1 Mb (http)(custom) TAR (of BW, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap