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Series GSE119087 Query DataSets for GSE119087
Status Public on Aug 29, 2018
Title Human Boolean Implication Network
Sample organism Homo sapiens
Experiment type Expression profiling by array
Third-party reanalysis
Summary Numerous gene expression datasets from diverse human tissue samples have been already deposited in the public domain. There have been several attempts to do large scale meta-analyses of all of these datasets. Most of these analyses summarize pairwise gene expression relationships using correlation, or identify differentially expressed genes in two conditions. We propose here a new large scale meta-analysis of all of the publicly available human datasets to identify Boolean logical relationships between genes. Boolean logic is a branch of mathematics that deals with two possible values. In the context of gene expression datasets we use qualitative high and low expression values. A strong logical relationship between genes emerges if at least one of the quadrants is sparsely populated.
Overall design 25,955 published human microarray samples assayed on the GPL570 were re-analyzed. RMA was used to normalize the RAW CEL files all together.
Contributor(s) Sahoo D
Citation(s) 31091168, 32322218
Submission date Aug 27, 2018
Last update date Apr 27, 2020
Contact name Debashis Sahoo
Phone 6508624736
Organization name UCSD
Department Pediatrics
Lab Boolean
Street address 9500 Gillman Drive
City La Jolla
State/province California
ZIP/Postal code 92093
Country USA
This SubSeries is part of SuperSeries:
GSE119128 An unbiased Boolean analysis of public gene expression data for core cell cycle gene classification

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SOFT formatted family file(s) SOFTHelp
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Supplementary file Size Download File type/resource
GSE119087_README.txt 2.3 Kb (ftp)(http) TXT
GSE119087_human-gpl570-bv.txt.gz 218.9 Mb (ftp)(http) TXT
GSE119087_human-gpl570-expr.txt.gz 5.1 Gb (ftp)(http) TXT
GSE119087_human-gpl570-idx.txt.gz 1.1 Mb (ftp)(http) TXT
GSE119087_human-gpl570-thr.txt.gz 1.4 Mb (ftp)(http) TXT
GSE119087_human_re-analyzed_Samples.txt.gz 65.0 Kb (ftp)(http) TXT
Raw data not provided for this record
Processed data are available on Series record

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