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Series GSE119087 Query DataSets for GSE119087
Status Public on Aug 29, 2018
Title Human Boolean Implication Network
Sample organism Homo sapiens
Experiment type Expression profiling by array
Third-party reanalysis
Summary Numerous gene expression datasets from diverse human tissue samples have been already deposited in the public domain. There have been several attempts to do large scale meta-analyses of all of these datasets. Most of these analyses summarize pairwise gene expression relationships using correlation, or identify differentially expressed genes in two conditions. We propose here a new large scale meta-analysis of all of the publicly available human datasets to identify Boolean logical relationships between genes. Boolean logic is a branch of mathematics that deals with two possible values. In the context of gene expression datasets we use qualitative high and low expression values. A strong logical relationship between genes emerges if at least one of the quadrants is sparsely populated.
 
Overall design 25,955 published human microarray samples assayed on the GPL570 were re-analyzed. RMA was used to normalize the RAW CEL files all together.
 
Contributor(s) Sahoo D
Citation(s) 31091168, 32322218
Submission date Aug 27, 2018
Last update date Apr 27, 2020
Contact name Debashis Sahoo
E-mail(s) dsahoo@ucsd.edu
Phone 6508624736
Organization name UCSD
Department Pediatrics
Lab Boolean
Street address 9500 Gillman Drive
City La Jolla
State/province California
ZIP/Postal code 92093
Country USA
 
This SubSeries is part of SuperSeries:
GSE119128 An unbiased Boolean analysis of public gene expression data for core cell cycle gene classification

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SOFT formatted family file(s) SOFTHelp
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Supplementary file Size Download File type/resource
GSE119087_README.txt 2.3 Kb (ftp)(http) TXT
GSE119087_human-gpl570-bv.txt.gz 218.9 Mb (ftp)(http) TXT
GSE119087_human-gpl570-expr.txt.gz 5.1 Gb (ftp)(http) TXT
GSE119087_human-gpl570-idx.txt.gz 1.1 Mb (ftp)(http) TXT
GSE119087_human-gpl570-thr.txt.gz 1.4 Mb (ftp)(http) TXT
GSE119087_human_re-analyzed_Samples.txt.gz 65.0 Kb (ftp)(http) TXT
Raw data not provided for this record
Processed data are available on Series record

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