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Series GSE119815 Query DataSets for GSE119815
Status Public on Sep 12, 2018
Title Seh1 Interacts with Olig2 and Brd7 to Promote Oligodendrocyte Differentiation and Myelination (ATAC_Seq)
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Nuclear pore complex components (Nups) are involved in neural development and alterations in Nup genes are linked to human neurological diseases. However, the physiological functions of specific Nups and the underlying mechanisms involved in these processes remain elusive. Here we show that tissue-specific depletion of nucleoporin Seh1 causes dramatic myelination defects in the Central Nervous System (CNS). Seh1-deficient Oligodendrocyte Progenitor Cells (OPCs) proliferate properly, but fail to differentiate into mature oligodendrocytes, which impairs myelin production and remyelination after demyelinating injury. Genome-wide analyses show that Seh1 regulates a core myelinogenic regulatory network and depletion of Seh1 alters open chromatin configurations at its target genes. Mechanistically, Seh1 regulates OPCs differentiation by assembling Olig2 and Brd7 into a transcription complex at nuclear pores. Together, our results reveal that Seh1 is required for oligodendrocyte differentiation and myelination by promoting assembly of an Olig2-dependent transcription complex and expose nucleoporins as key players in the CNS.
 
Overall design ChIP was performed on rat oligodendrocyte progenitor cells and immature oligodendrocytes(T3 D1) using antibodies against seh1 or IgG. RNA-seq was performed on mouse control or Seh1cKO immature oligodendrocytes(T3 D2). Atac-seq was performed on mouse control or Seh1cKO oligodendrocyte progenitor cells and immature oligodendrocytes(T3 D1).
 
Contributor(s) Zhang L, Liu Z
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Submission date Sep 11, 2018
Last update date Mar 01, 2019
Contact name Liu Zhixiong
E-mail(s) 2452503371@qq.com
Phone 8615160067720
Organization name Xiamen University
Department School of Life Sciences
Lab State Key Laboratory for Cellular Stress Biology, Innovation Center for Cell Signaling Network
Street address Xiangan Nanlu 4221-120
City xiamen
State/province Fujian
ZIP/Postal code 361102
Country China
 
Platforms (1)
GPL21273 HiSeq X Ten (Mus musculus)
Samples (3)
GSM3384418 control_DO_ATAC-Seq
GSM3384419 control_D1_ATAC-Seq
GSM3384420 Seh1cKO_D1_ATAC-Seq
This SubSeries is part of SuperSeries:
GSE119816 Seh1 Interacts with Olig2 and Brd7 to Promote Oligodendrocyte Differentiation and Myelination
Relations
BioProject PRJNA490366
SRA SRP161510

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE119815_RAW.tar 6.3 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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