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GEO accession:
Series GSE120110
Query DataSets for GSE120110
Status
Public on Jun 27, 2019
Title
Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-based Regulation of Transcription
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
31251911
Submission date
Sep 18, 2018
Last update date
Sep 26, 2019
Contact name
Rui Xiao
E-mail(s)
xiaorui9@whu.edu.cn
Organization name
Wuhan University
Department
Medical Research Institute
Lab
RNA Biology Lab
Street address
Medical Research Institute, Wuhan University
City
Wuhan
State/province
Hubei
ZIP/Postal code
430071
Country
China
Platforms (3)
GPL11154
Illumina HiSeq 2000 (Homo sapiens)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL20795
HiSeq X Ten (Homo sapiens)
Samples (152)
Less...
More...
GSM3391789
Control BL-HiC rep1
GSM3391790
Control BL-HiC rep2
GSM3391791
RBM25-KD BL-HiC rep1
GSM3391792
RBM25-KD BL-HiC rep2
GSM3393527
SRSF1_ChIP-seq_HepG2
GSM3393528
SRSF3_ChIP-seq_HepG2
GSM3393529
SRSF4_ChIP-seq_HepG2
GSM3393530
SRSF7_ChIP-seq_HepG2
GSM3393531
SRSF9_ChIP-seq_HepG2
GSM3393532
U2AF1_ChIP-seq_HepG2
GSM3393533
U2AF2_ChIP-seq_HepG2
GSM3393534
HNRNPC_ChIP-seq_HepG2
GSM3393535
HNRNPH1_ChIP-seq_HepG2
GSM3393536
HNRNPK_ChIP-seq_HepG2
GSM3393537
HNRNPL_ChIP-seq_HepG2
GSM3393538
HNRNPLL_ChIP-seq_HepG2
GSM3393539
HNRNPUL1_ChIP-seq_HepG2
GSM3393540
PTBP1_ChIP-seq_HepG2
GSM3393541
PCBP1_ChIP-seq_HepG2
GSM3393542
PCBP2_ChIP-seq_HepG2
GSM3393543
FUS_ChIP-seq_HepG2
GSM3393544
TAF15_ChIP-seq_HepG2
GSM3393545
SNRNP70_ChIP-seq_HepG2
GSM3393546
PRPF4_ChIP-seq_HepG2
GSM3393547
FIP1L1_ChIP-seq_HepG2
GSM3393548
RBFOX2_ChIP-seq_HepG2
GSM3393549
RBM22_ChIP-seq_HepG2
GSM3393550
RBM25_ChIP-seq_HepG2
GSM3393551
RBM39_ChIP-seq_HepG2
GSM3393552
AGO1_ChIP-seq_HepG2
GSM3393553
AGO2_ChIP-seq_HepG2
GSM3393554
SAFB2_ChIP-seq_HepG2
GSM3393555
NONO_ChIP-seq_HepG2
GSM3393556
GTF2F1_ChIP-seq_HepG2
GSM3393557
POLR2G_ChIP-seq_HepG2
GSM3393558
SFPQ_ChIP-seq_HepG2
GSM3393559
TARDBP_ChIP-seq_HepG2
GSM3393560
XRCC5_ChIP-seq_HepG2
GSM3393561
CCAR2_ChIP-seq_HepG2
GSM3393562
input_Control_HepG2_batch3
GSM3393563
input_Control_HepG2_batch5
GSM3393564
input_Control_HepG2_batch6
GSM3393565
input_Control_HepG2_batch7
GSM3393566
input_Control_HepG2_batch8
GSM3393567
input_Control_HepG2_batch10
GSM3393568
input_Control_HepG2_batch11
GSM3393569
input_Control_HepG2_batch12
GSM3393570
input_Control_HepG2_batch13
GSM3393571
input_Control_HepG2_batch14
GSM3393572
input_Control_HepG2_batch15
GSM3393573
input_Control_HepG2_batch16
GSM3393574
input_Control_HepG2_batch17
GSM3393575
SRSF1_ChIP-seq_K562
GSM3393576
SRSF3_ChIP-seq_K562
GSM3393577
SRSF4_ChIP-seq_K562
GSM3393578
SRSF7_ChIP-seq_K562
GSM3393579
SRSF9_ChIP-seq_K562
GSM3393580
U2AF1_ChIP-seq_K562
GSM3393581
U2AF2_ChIP-seq_K562
GSM3393582
HNRNPC_ChIP-seq_K562
GSM3393583
HNRNPH1_ChIP-seq_K562
GSM3393584
HNRNPK_ChIP-seq_K562
GSM3393585
HNRNPL_ChIP-seq_K562
GSM3393586
HNRNPLL_ChIP-seq_K562
GSM3393587
HNRNPUL1_ChIP-seq_K562
GSM3393588
PTBP1_ChIP-seq_K562
GSM3393589
PCBP1_ChIP-seq_K562
GSM3393590
PCBP2_ChIP-seq_K562
GSM3393591
FUS_ChIP-seq_K562
GSM3393592
TAF15_ChIP-seq_K562
GSM3393593
SNRNP70_ChIP-seq_K562
GSM3393594
PRPF4_ChIP-seq_K562
GSM3393595
FIP1L1_ChIP-seq_K562
GSM3393596
RBFOX2_ChIP-seq_K562
GSM3393597
RBM22_ChIP-seq_K562
GSM3393598
RBM25_ChIP-seq_K562
GSM3393599
RBM39_ChIP-seq_K562
GSM3393600
AGO1_ChIP-seq_K562
GSM3393601
SAFB_ChIP-seq_K562
GSM3393602
SAFB2_ChIP-seq_K562
GSM3393603
NONO_ChIP-seq_K562
GSM3393604
GTF2F1_ChIP-seq_K562
GSM3393605
POLR2G_ChIP-seq_K562
GSM3393606
SFPQ_ChIP-seq_K562
GSM3393607
TARDBP_ChIP-seq_K562
GSM3393608
XRCC5_ChIP-seq_K562
GSM3393609
CCAR2_ChIP-seq_K562
GSM3393610
input_Control_K562_batch1
GSM3393611
input_Control_K562_batch2
GSM3393612
input_Control_K562_batch3
GSM3393613
input_Control_K562_batch4
GSM3393614
input_Control_K562_batch5
GSM3393615
input_Control_K562_batch6
GSM3393616
input_Control_K562_batch7
GSM3393617
input_Control_K562_batch8
GSM3393618
input_Control_K562_batch9
GSM3393619
input_Control_K562_batch10
GSM3393620
input_Control_K562_batch11
GSM3393621
RBM25_NC ChIP-seq rep1
GSM3393622
RBM25_NC ChIP-seq rep2
GSM3393623
RBM25_YY1-KD ChIP-seq rep1
GSM3393624
RBM25_YY1-KD ChIP-seq rep2
GSM3393625
RBM25_NC ChIP-seq Input rep1
GSM3393626
RBM25_NC ChIP-seq Input rep2
GSM3393627
RBM25_YY1-KD ChIP-seq Input rep1
GSM3393628
RBM25_YY1-KD ChIP-seq Input rep2
GSM3393629
YY1_NC ChIP-seq rep1
GSM3393630
YY1_NC ChIP-seq rep2
GSM3393631
YY1_RBM25-KD ChIP-seq rep1
GSM3393632
YY1_RBM25-KD ChIP-seq rep2
GSM3393633
YY1_NC ChIP-seq Input rep1
GSM3393634
YY1_NC ChIP-seq Input rep2
GSM3393635
YY1_RBM25-KD ChIP-seq Input rep1
GSM3393636
YY1_RBM25-KD ChIP-seq Input rep2
GSM3393668
Control_GRO_rep1_HepG2_batch1
GSM3393669
Control_GRO_rep2_HepG2_batch1
GSM3393670
AGO1.KD_GRO_rep1_HepG2_batch1
GSM3393671
AGO1.KD_GRO_rep2_HepG2_batch1
GSM3393672
AGO2.KD_GRO_rep1_HepG2_batch1
GSM3393673
AGO2.KD_GRO_rep2_HepG2_batch1
GSM3393674
HNRNPL.KD_GRO_rep1_HepG2_batch1
GSM3393675
HNRNPL.KD_GRO_rep2_HepG2_batch1
GSM3393676
SRSF4.KD_GRO_rep1_HepG2_batch1
GSM3393677
SRSF4.KD_GRO_rep2_HepG2_batch1
GSM3393678
U2AF1.KD_GRO_rep1_HepG2_batch1
GSM3393679
U2AF1.KD_GRO_rep2_HepG2_batch1
GSM3393680
U2AF2.KD_GRO_rep1_HepG2_batch1
GSM3393681
U2AF2.KD_GRO_rep2_HepG2_batch1
GSM3393682
Control_GRO_rep1_HepG2_batch2
GSM3393683
Control_GRO_rep2_HepG2_batch2
GSM3393684
HNRNPH1.KD_GRO_rep1_HepG2_batch2
GSM3393685
HNRNPH1.KD_GRO_rep2_HepG2_batch2
GSM3393686
HNRNPK.KD_GRO_rep1_HepG2_batch2
GSM3393687
HNRNPK.KD_GRO_rep2_HepG2_batch2
GSM3393688
HNRNPLL.KD_GRO_rep1_HepG2_batch2
GSM3393689
HNRNPLL.KD_GRO_rep2_HepG2_batch2
GSM3393690
PCBP2.KD_GRO_rep1_HepG2_batch2
GSM3393691
PCBP2.KD_GRO_rep2_HepG2_batch2
GSM3393692
PTBP1.KD_GRO_rep1_HepG2_batch2
GSM3393693
PTBP1.KD_GRO_rep2_HepG2_batch2
GSM3393694
RBM22.KD_GRO_rep1_HepG2_batch2
GSM3393695
RBM22.KD_GRO_rep2_HepG2_batch2
GSM3393696
RBM25.KD_GRO_rep1_HepG2_batch2
GSM3393697
RBM25.KD_GRO_rep2_HepG2_batch2
GSM3393698
XRCC5.KD_GRO_rep1_HepG2_batch2
GSM3393699
XRCC5.KD_GRO_rep2_HepG2_batch2
GSM3393700
Control_GRO_rep1_HepG2_batch3
GSM3393701
Control_GRO_rep2_HepG2_batch3
GSM3393702
YY1.KD_GRO_rep1_HepG2_batch3
GSM3393703
YY1.KD_GRO_rep2_HepG2_batch3
GSM3393704
RBM25.KD_GRO_rep1_HepG2_batch3
GSM3393705
RBM25.KD_GRO_rep2_HepG2_batch3
This SuperSeries is composed of the following SubSeries:
GSE120023
Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-based Regulation of Transcription [HiC-Seq]
GSE120104
Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-based Regulation of Transcription [ChIP-Seq]
GSE120105
Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-based Regulation of Transcription [GRO-Seq]
Relations
BioProject
PRJNA491670
Download family
Format
SOFT formatted family file(s)
SOFT
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Series Matrix File(s)
TXT
Supplementary file
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Download
File type/resource
GSE120110_RAW.tar
67.8 Gb
(http)
(custom)
TAR (of BED, BW, NARROWPEAK, TXT)
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