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Status |
Public on Nov 01, 2019 |
Title |
Profiling of circular RNAs in gastric cancer tissues and adjacent normal tissues |
Organism |
Homo sapiens |
Experiment type |
Non-coding RNA profiling by high throughput sequencing
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Summary |
Purpose: To investigate the role and mechanism of circRNAs in gastric cancer. Methods: RNA-seq of ribosomal RNA-depleted total RNA and qRT-PCR were performed to screen differential expressed circRNAs between paired gastric cancer tissues and adjacent normal tissues. Results: A total of 57623 distinct circRNAs were identified in these samples, and 35120 of these circRNAs contained at least two independent back-spliced reads in at least two samples. Compared with circBase, we found that there were 29007 matched circRNAs and 28616 novel circRNAs in our study.
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Overall design |
Gastric circRNA profiles of paired gastric cancer tissues and adjacent normal tissues were generated by deep sequencing, using Illumina HiSeq Xten.
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Contributor(s) |
Yang S, Hu C |
Citation(s) |
32164722 |
Submission date |
Oct 18, 2018 |
Last update date |
Mar 23, 2020 |
Contact name |
Mengmeng Jie |
E-mail(s) |
jmm_416@126.com
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Organization name |
Third Military Medical University Xinqiao Hospital
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Street address |
No. 83, Xinqiao street
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City |
chongqing |
ZIP/Postal code |
400037 |
Country |
China |
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Platforms (1) |
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Samples (6)
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Relations |
BioProject |
PRJNA497366 |
SRA |
SRP166066 |