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Series GSE121445 Query DataSets for GSE121445
Status Public on Nov 01, 2019
Title Profiling of circular RNAs in gastric cancer tissues and adjacent normal tissues
Organism Homo sapiens
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary Purpose: To investigate the role and mechanism of circRNAs in gastric cancer.
Methods: RNA-seq of ribosomal RNA-depleted total RNA and qRT-PCR were performed to screen differential expressed circRNAs between paired gastric cancer tissues and adjacent normal tissues.
Results: A total of 57623 distinct circRNAs were identified in these samples, and 35120 of these circRNAs contained at least two independent back-spliced reads in at least two samples. Compared with circBase, we found that there were 29007 matched circRNAs and 28616 novel circRNAs in our study.
 
Overall design Gastric circRNA profiles of paired gastric cancer tissues and adjacent normal tissues were generated by deep sequencing, using Illumina HiSeq Xten.
 
Contributor(s) Yang S, Hu C
Citation(s) 32164722
Submission date Oct 18, 2018
Last update date Mar 23, 2020
Contact name Mengmeng Jie
E-mail(s) jmm_416@126.com
Organization name Third Military Medical University Xinqiao Hospital
Street address No. 83, Xinqiao street
City chongqing
ZIP/Postal code 400037
Country China
 
Platforms (1)
GPL20795 HiSeq X Ten (Homo sapiens)
Samples (6)
GSM3436617 1C: Gastric cancer
GSM3436618 1P: Adjacent tissue
GSM3436619 2C: Gastric cancer
Relations
BioProject PRJNA497366
SRA SRP166066

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE121445_fpkm.txt.gz 931.8 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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