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| Status |
Public on Sep 16, 2008 |
| Title |
Global Analysis of the Meiotic Crossover Landscape |
| Organism |
Saccharomyces cerevisiae |
| Experiment type |
Genome variation profiling by array
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| Summary |
Using microarrays to genotype the parental origin of progeny resulting from a cross between S96 and YJM789 yeast strains, we mapped the distribution of crossovers that occurred during meiosis. Knowledge of the crossover distribution allowed us to assess changes in crossover control in wild type and mutant strains.
The S96 strain is a S288 derivative and thus its DNA sequence has high homology to the oligo sequences used to create the S98 Affymetrix Gene chip. The YJM789 strain is ~ 0.6% divergent from S288.
Keywords: wild type and mutant analysis
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| Overall design |
Strains were allowed to undergo sporulation (meiosis) and progeny (spores) from 4-spore viable tetrads were grown and genomic DNA was extracted and hybridzed to S98 Affymetrix Gene chips. Segregation patterns were analyzed for the location of crossovers which are represented by reciprocal exchange of DNA.
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| Contributor(s) |
Chen S, Fung J |
| Citation(s) |
18691940 |
| Submission date |
Jul 18, 2008 |
| Last update date |
Jul 01, 2016 |
| Contact name |
Jennifer Fung |
| E-mail(s) |
jfung@biochem.ucsf.edu
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| Phone |
415 514-4309
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| Fax |
415 514-4145
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| Organization name |
UCSF
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| Department |
Biochemistry and Biophysics
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| Lab |
Fung
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| Street address |
S316 Genentech Hall, MC2200 600 16th St.
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| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94158 |
| Country |
USA |
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| Platforms (1) |
| GPL90 |
[YG_S98] Affymetrix Yeast Genome S98 Array |
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| Samples (140)
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| GSM306312 |
wild type tetrad 5, spore A, B, C, D |
| GSM306313 |
wild type tetrad 6, spore A, B, C, D |
| GSM306314 |
wild type tetrad 10, spore A, B, C, D |
| GSM306315 |
wild type tetrad 11, spore A, B, C, D |
| GSM306316 |
wild type tetrad 24, spore A, B, C, D |
| GSM306317 |
wild type tetrad 29, spore A, B, C, D |
| GSM306318 |
wild type tetrad 30, spore A, B, C, D |
| GSM306319 |
wild type tetrad 31, spore A, B, C, D |
| GSM306320 |
wild type tetrad 33, spore A, B, C, D |
| GSM306321 |
wild type tetrad 34, spore A, B, C, D |
| GSM306322 |
wild type tetrad 35, spore A, B, C, D |
| GSM306323 |
wild type tetrad 36, spore A, B, C, D |
| GSM306324 |
wild type tetrad 37, spore A, B, C, D |
| GSM306325 |
wild type tetrad 38, spore A, B, C, D |
| GSM306326 |
wild type tetrad 39, spore A, B, C, D |
| GSM306327 |
wild type tetrad 40, spore A, B, C, D |
| GSM306328 |
wild type tetrad 44, spore A, B, C, D |
| GSM306329 |
wild type tetrad 46, spore A, B, C, D |
| GSM306330 |
wild type tetrad 49, spore A, B, C, D |
| GSM306331 |
wild type tetrad 51, spore A, B, C, D |
| GSM306332 |
wild type tetrad 54, spore A, B, C, D |
| GSM306333 |
wild type tetrad 55, spore A, B, C, D |
| GSM306334 |
wild type tetrad 58, spore A, B, C, D |
| GSM306335 |
wild type tetrad 63, spore A, B, C, D |
| GSM306336 |
wild type tetrad 64, spore A, B, C, D |
| GSM306337 |
wild type tetrad 65, spore A, B, C, D |
| GSM306338 |
zip1 tetrad 1, spore A, B, C, D |
| GSM306339 |
zip1 tetrad 13, spore A, B, C, D |
| GSM306340 |
zip1 tetrad 15, spore A, B, C, D |
| GSM306341 |
zip1 tetrad 16, spore A, B, C, D |
| GSM306342 |
zip1 tetrad 17, spore A, B, C, D |
| GSM306343 |
zip1 tetrad 18, spore A, B, C, D |
| GSM306344 |
zip1 tetrad 19, spore A, B, C, D |
| GSM306345 |
zip1 tetrad 23, spore A, B, C, D |
| GSM306346 |
zip1 tetrad 30, spore A, B, C, D |
| GSM306347 |
zip2 tetrad27, spore A, B, C, D |
| GSM306348 |
zip2 tetrad28, spore A, B, C, D |
| GSM306349 |
zip2 tetrad29, spore A, B, C, D |
| GSM306350 |
zip2 tetrad30, spore A, B, C, D |
| GSM306351 |
zip2 tetrad31, spore A, B, C, D |
| GSM306352 |
zip2 tetrad32, spore A, B, C, D |
| GSM306353 |
zip2 tetrad33, spore A, B, C, D |
| GSM306354 |
zip2 tetrad35, spore A, B, C, D |
| GSM306355 |
zip2 tetrad37, spore A, B, C, D |
| GSM306356 |
zip2 tetrad38, spore A, B, C, D |
| GSM306357 |
zip2 tetrad39, spore A, B, C, D |
| GSM306358 |
zip2 tetrad39r, spore A, B, C, D |
| GSM306359 |
zip2 tetrad40r, spore A, B, C, D |
| GSM306360 |
zip2 tetrad41r, spore A, B, C, D |
| GSM306361 |
zip2 tetrad43r, spore A, B, C, D |
| GSM306362 |
zip2 tetrad44r, spore A, B, C, D |
| GSM306363 |
zip2 tetrad48r, spore A, B, C, D |
| GSM306364 |
zip2 tetrad51r, spore A, B, C, D |
| GSM306365 |
zip2 tetrad53r, spore A, B, C, D |
| GSM306366 |
zip2 tetrad56r, spore A, B, C, D |
| GSM306367 |
zip2 tetrad58r, spore A, B, C, D |
| GSM306368 |
zip2 tetrad59r, spore A, B, C, D |
| GSM306369 |
zip2 tetrad60r, spore A, B, C, D |
| GSM306370 |
zip2 tetrad61r, spore A, B, C, D |
| GSM306371 |
zip2 tetrad62r, spore A, B, C, D |
| GSM306372 |
zip2 tetrad63r, spore A, B, C, D |
| GSM306373 |
zip3 tetrad 1, spore A, B, C, D |
| GSM306374 |
zip3 tetrad 2, spore A, B, C, D |
| GSM306375 |
zip3 tetrad 3, spore A, B, C, D |
| GSM306376 |
zip3 tetrad 4, spore A, B, C, D |
| GSM306377 |
zip3 tetrad 5, spore A, B, C, D |
| GSM306378 |
zip3 tetrad 9, spore A, B, C, D |
| GSM306379 |
zip3 tetrad 10, spore A, B, C, D |
| GSM306380 |
zip3 tetrad 12, spore A, B, C, D |
| GSM306381 |
zip4 tetrad 1, spore A, B, C, D |
| GSM306382 |
zip4 tetrad 2, spore A, B, C, D |
| GSM306383 |
zip4 tetrad 3, spore A, B, C, D |
| GSM306384 |
zip4 tetrad 6, spore A, B, C, D |
| GSM306385 |
zip4 tetrad 7, spore A, B, C, D |
| GSM306386 |
zip4 tetrad 9, spore A, B, C, D |
| GSM306387 |
zip4 tetrad 10, spore A, B, C, D |
| GSM306388 |
zip4 tetrad 11, spore A, B, C, D |
| GSM306389 |
zip4 tetrad 15, spore A, B, C, D |
| GSM306390 |
zip4 tetrad 16, spore A, B, C, D |
| GSM306391 |
zip4 tetrad 17, spore A, B, C, D |
| GSM306392 |
zip4 tetrad 18, spore A, B, C, D |
| GSM306393 |
zip4 tetrad 21, spore A, B, C, D |
| GSM306394 |
zip4 tetrad 22, spore A, B, C, D |
| GSM306395 |
zip4 tetrad 23, spore A, B, C, D |
| GSM306396 |
zip4 tetrad 27, spore A, B, C, D |
| GSM306397 |
zip4 tetrad 31, spore A, B, C, D |
| GSM306398 |
zip4 tetrad 32, spore A, B, C, D |
| GSM306399 |
zip4 tetrad 33, spore A, B, C, D |
| GSM306400 |
zip4 tetrad 36, spore A, B, C, D |
| GSM306401 |
zip4 tetrad 37, spore A, B, C, D |
| GSM306402 |
zip4 tetrad 38, spore A, B, C, D |
| GSM306403 |
zip4 tetrad 39, spore A, B, C, D |
| GSM306404 |
zip4 tetrad 40, spore A, B, C, D |
| GSM306405 |
zip4 tetrad 42, spore A, B, C, D |
| GSM306406 |
zip4 tetrad 43, spore A, B, C, D |
| GSM306407 |
zip4 tetrad 45, spore A, B, C, D |
| GSM306408 |
zip4 tetrad 48, spore A, B, C, D |
| GSM306409 |
zip4 tetrad 49, spore A, B, C, D |
| GSM306410 |
zip4 tetrad 50, spore A, B, C, D |
| GSM306411 |
zip4 tetrad 51, spore A, B, C, D |
| GSM306412 |
zip4 tetrad 52, spore A, B, C, D |
| GSM306413 |
zip4 tetrad 53, spore A, B, C, D |
| GSM306414 |
zip4 tetrad 54, spore A, B, C, D |
| GSM306415 |
msh4 tetrad 1, spore A, B, C, D |
| GSM306416 |
msh4 tetrad 2, spore A, B, C, D |
| GSM306417 |
msh4 tetrad 3, spore A, B, C, D |
| GSM306418 |
msh4 tetrad 4, spore A, B, C, D |
| GSM306419 |
msh4 tetrad 5, spore A, B, C, D |
| GSM306420 |
msh4 tetrad 6, spore A, B, C, D |
| GSM306421 |
msh4 tetrad 7, spore A, B, C, D |
| GSM306422 |
msh4 tetrad 8, spore A, B, C, D |
| GSM306423 |
msh4 tetrad 9, spore A, B, C, D |
| GSM306424 |
msh4 tetrad 10, spore A, B, C, D |
| GSM306425 |
msh4 tetrad 11, spore A, B, C, D |
| GSM306426 |
spo16 tetrad 1, spore A, B, C, D |
| GSM306427 |
spo16 tetrad 11, spore A, B, C, D |
| GSM306428 |
spo16 tetrad 12, spore A, B, C, D |
| GSM306429 |
spo16 tetrad 13, spore A, B, C, D |
| GSM306430 |
spo16 tetrad 15, spore A, B, C, D |
| GSM306431 |
spo16 tetrad 16, spore A, B, C, D |
| GSM306432 |
spo16 tetrad 17, spore A, B, C, D |
| GSM306433 |
spo16 tetrad 18, spore A, B, C, D |
| GSM306434 |
ndj1 tetrad 1, spore A, B, C, D |
| GSM306435 |
ndj1 tetrad 2, spore A, B, C, D |
| GSM306436 |
ndj1 tetrad 3, spore A, B, C, D |
| GSM306437 |
ndj1 tetrad 5, spore A, B, C, D |
| GSM306438 |
ndj1 tetrad 8, spore A, B, C, D |
| GSM306439 |
ndj1 tetrad 11, spore A, B, C, D |
| GSM306440 |
ndj1 tetrad 12, spore A, B, C, D |
| GSM306441 |
sgs1 tetrad 1, spore A, B, C, D |
| GSM306442 |
sgs1 tetrad 2, spore A, B, C, D |
| GSM306443 |
sgs1 tetrad 3, spore A, B, C, D |
| GSM306444 |
sgs1 tetrad 7, spore A, B, C, D |
| GSM306445 |
sgs1 tetrad 8, spore A, B, C, D |
| GSM306446 |
sgs1 tetrad 9, spore A, B, C, D |
| GSM306447 |
sgs1 tetrad 10, spore A, B, C, D |
| GSM306448 |
sgs1 tetrad 11, spore A, B, C, D |
| GSM306449 |
sgs1 tetrad 12, spore A, B, C, D |
| GSM306450 |
sgs1 tetrad 13, spore A, B, C, D |
| GSM306451 |
sgs1 tetrad 16, spore A, B, C, D |
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| Relations |
| BioProject |
PRJNA113459 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE12170_RAW.tar |
1.2 Gb |
(http)(custom) |
TAR (of CEL, TXT) |
| Processed data provided as supplementary file |
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