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Series GSE122183 Query DataSets for GSE122183
Status Public on Nov 06, 2018
Title Expression data from colorectal cancer and the adjacent normal tissues infected without F. nucleatum
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Colorectal cancer and the adjacent normal tissues (CONTROL) infected with F. nucleatum. Total RNA of cells was extracted using the TRIzol® Reagent (Life Technologies) and cDNA was generated using the PimeScript TMRT Reagent Kit (Takara).
We used microarrays to detail the global programme of gene expression underlying cellularisation and identified distinct classes of up-regulated and down-regulated genes between Colorectal cancer and the adjacent normal tissues (CONTROL) infected without F. nucleatum .
 
Overall design Affymetrix’ new GeneChip® Human Transcriptome Array 2.0 chips were used to analysis 25 specimens (15 colorectal cancers, 10 controls).
 
Contributor(s) Tang B
Citation(s) 30951563, 37216106
Submission date Nov 05, 2018
Last update date Aug 08, 2023
Contact name bin tang
E-mail(s) tangbin811012@163.com
Phone 15281936788
Organization name Southwest Hospital &College of Medical Laboratory Science; Third Military Medical University
Department Department of Clinical Microbiology and Immunology
Street address Southwest Hospital &College of Medical Laboratory Science; Third Military Medical University
City chongqing
State/province chongqing
ZIP/Postal code 400038
Country China
 
Platforms (1)
GPL17586 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
Samples (25)
GSM3457347 Early stage of colorectal cancer tissues without F. nucleatum infection,rep1
GSM3457348 Early stage of colorectal cancer tissues without F. nucleatum infection,rep2
GSM3457349 Early stage of colorectal cancer tissues without F. nucleatum infection,rep3
Relations
BioProject PRJNA503888

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE122183_RAW.tar 544.8 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table
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