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| Status |
Public on Nov 07, 2018 |
| Title |
The non-canonical SMC protein SmcHD1 antagonises TAD formation on the inactive X chromosome (Repli-seq) |
| Organism |
Mus musculus |
| Experiment type |
Other
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| Summary |
In this study we investigate the role of the non-canonical SMC family protein, SmcHD1in the X inactivation.
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| Overall design |
Allele-specific repli-seq experiments were done in wild-type and SmcHD1mut (SmcHD1 null MommeD1 mutant cells) interspecific MEFs
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| Contributor(s) |
Gdula MR, Nesterova TB, Pintacuda G, Godwin J, McClellan M, Kriaucionis S, Krueger F, Reik W, Zhan Y, Ozadam H, Dekker J, Green CM, Moralli D, Heard E, Brockdorff N |
| Citation(s) |
30604745 |
| Submission date |
Nov 05, 2018 |
| Last update date |
Jan 15, 2019 |
| Contact name |
Michal R. Gdula |
| E-mail(s) |
michal.gdula@bioch.ox.ac.uk
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| Organization name |
Oxford University
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| Street address |
South Parks Road
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| City |
Oxford |
| ZIP/Postal code |
OX1 3RF |
| Country |
United Kingdom |
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| Platforms (1) |
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| Samples (8)
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| This SubSeries is part of SuperSeries: |
| GSE115984 |
The non-canonical SMC protein SmcHD1 antagonises TAD formation on the inactive X chromosome |
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| Relations |
| BioProject |
PRJNA503902 |
| SRA |
SRP167894 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE122196_MommeD1mut_active_X_repliSeq_score.txt.gz |
4.8 Kb |
(ftp)(http) |
TXT |
| GSE122196_MommeD1mut_both_X_repliSeq_score.txt.gz |
4.9 Kb |
(ftp)(http) |
TXT |
| GSE122196_MommeD1mut_inactive_X_repliSeq_score.txt.gz |
4.8 Kb |
(ftp)(http) |
TXT |
| GSE122196_wild_type_active_X_repliSeq_score.txt.gz |
4.8 Kb |
(ftp)(http) |
TXT |
| GSE122196_wild_type_both_X_repliSeq_score.txt.gz |
4.9 Kb |
(ftp)(http) |
TXT |
| GSE122196_wild_type_inactive_X_repliSeq_score.txt.gz |
4.7 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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