|
| Status |
Public on Nov 18, 2018 |
| Title |
HIV Nef transfected HEK293T cell culture and HIV mock transfected HEK293T cell culture [miRNA] |
| Organism |
Homo sapiens |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
Purpose: Comparison of RNA-sequencing datasets obtained from exosomes of Nef-transfected and Mock-transfected HEK293T cells
Methods: Assessment of RNA content of exosomes produced by Nef-transfected HEK293T cells and and Mock-transfected HEK293T cells
Results: Differences in a set of microRNAs
Conclusions: Nef-transfection induces changes in the microRNA content of exosomes
|
| |
|
| Overall design |
HIV Nef transfected HEK293T cell culture and HIV mock transfected HEK293T cell culture
|
| |
|
| Contributor(s) |
Brichacek B, Bukrinsky M, Stern D, Clement R, Dubrovsky L, Horvath A |
| Citation(s) |
31344124 |
| Submission date |
Nov 17, 2018 |
| Last update date |
Aug 21, 2019 |
| Contact name |
Michael Bukrinsky |
| E-mail(s) |
mbukrins@gwu.edu
|
| Organization name |
GWU
|
| Street address |
2300 I St
|
| City |
Washington |
| State/province |
District of Columbia |
| ZIP/Postal code |
20052 |
| Country |
USA |
| |
|
| Platforms (1) |
|
| Samples (8)
|
|
| This SubSeries is part of SuperSeries: |
| GSE122657 |
HIV Nef transfected HEK293T cell culture and HIV mock transfected HEK293T cell culture |
|
| Relations |
| BioProject |
PRJNA505884 |
| SRA |
SRP169503 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE122656_Mock.rep_compare.pdf |
1.3 Mb |
(ftp)(http) |
PDF |
| GSE122656_Nef.rep_compare.pdf |
1.2 Mb |
(ftp)(http) |
PDF |
| GSE122656_genes.counts.matrix.Mock_vs_Nef.edgeR.DE_results.MA_n_Volcano.pdf |
267.1 Kb |
(ftp)(http) |
PDF |
| GSE122656_genes.counts.matrix.Mock_vs_Nef.edgeR.DE_results.P0.05_C2.DE.subset.txt.gz |
552 b |
(ftp)(http) |
TXT |
| GSE122656_genes.counts.matrix.Mock_vs_Nef.edgeR.DE_results.P0.05_C2.Mock-UP.subset.txt.gz |
163 b |
(ftp)(http) |
TXT |
| GSE122656_genes.counts.matrix.Mock_vs_Nef.edgeR.DE_results.P0.05_C2.Nef-UP.subset.txt.gz |
556 b |
(ftp)(http) |
TXT |
| GSE122656_genes.counts.matrix.txt.gz |
427.2 Kb |
(ftp)(http) |
TXT |
| GSE122656_principal_components.pdf |
5.1 Kb |
(ftp)(http) |
PDF |
| GSE122656_sample_cor_matrix.pdf |
6.4 Kb |
(ftp)(http) |
PDF |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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