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Series GSE122668 Query DataSets for GSE122668
Status Public on Nov 20, 2018
Title A genetic murine model of CLL based on B cell-restricted expression of Sf3b1 mutation and Atm deletion
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The RNA splicing factor SF3B1 is recurrently mutated in chronic lymphocytic leukemia (CLL), but its functional role in the pathogenesis of this disease has not been firmly established. Here, we show that conditional expression of heterozygous Sf3b1-K700E mutation in mouse B lineage cells disrupts pre-mRNA splicing, alters B-cell development and function, and induces a state of cellular senescence. B-cell restricted expression of this mutation combined with Atm deletion led to the overcoming of cellular senescence, together with enhanced genome instability and the development of clonal B220+CD5+ CLL cells in elderly mice at low penetrance. Mice with CLL-like disease were found to have amplifications of chromosomes 15 and 17. Integrated transcriptome and proteome analysis of the CLL-like cells revealed coordinated dysregulation of multiple CLL-associated cellular processes. This included an unexpected signature of deregulated B-cell receptor (BCR) signaling, which we could also identify in SF3B1-mutated CLL samples from two independent patient cohorts. Notably, human CLLs harboring SF3B1 mutations exhibited greater sensitivity and altered response kinetics to BTK kinase ibrutinib. Our genetically faithful murine model of CLL thus reveals fresh insights regarding the impact of SF3B1 mutation on CLL pathogenesis and suggests a system for identifying vulnerabilities related to this mutation that can be further exploited for the treatment of CLLs with this common mutation.
 
Overall design RNA-seq of B cells from WT, Sf3b1 MT, Atm MT, DM and DM-CLL mice
Web link https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/pmc/articles/PMC6372356/
 
Contributor(s) Wang L, Yin S
Citation(s) 30712845
Submission date Nov 19, 2018
Last update date Mar 08, 2019
Contact name Catherine Wu
Organization name Dana-Farber Cancer Institute
Lab Wu lab
Street address 450 Brookline Avenue
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platforms (1)
GPL9185 Illumina Genome Analyzer (Mus musculus)
Samples (17)
GSM3477653 DFCI-5268-mse-sf3b1WTold-01
GSM3477654 DFCI-5268-mse-sf3b1WTold-02
GSM3477655 DFCI-5268-mse-sf3b1WTold-03
Relations
BioProject PRJNA505987
SRA SRP169553

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Supplementary file Size Download File type/resource
GSE122668_Processed_data_files.xlsx 1.8 Mb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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