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Series GSE12356 Query DataSets for GSE12356
Status Public on Nov 03, 2008
Title Analysis of Aiolos and OBF-1 deletions in bone marrow from 7 week old mice
Organism Mus musculus
Experiment type Expression profiling by array
Summary The chromatin regulator Aiolos and the transcriptional coactivator OBF-1 have been implicated in regulating aspects of B cell maturation and activation. Mice lacking either of these factors have a largely normal early B cell development. However, when both factors are eliminated simultaneously a block is uncovered at the transition between pre-B and immature B cells, indicating that these proteins exert a critical function in developing B lymphocytes. In mice deficient for Aiolos and OBF-1, the numbers of immature B cells are reduced, small pre-BII cells are increased and a significant impairment in immunoglobulin light chain DNA rearrangement is observed. We identified genes whose expression is deregulated in the pre-B cell compartment of these mice. In particular, we found that components of the pre-BCR, such as the surrogate light chain genes l5l5 and VpreB, fail to be efficiently silenced in double-mutant mice. Strikingly, developmentally regulated nuclear repositioning of the l5l5 gene is impaired in pre-B cells lacking OBF-1 and Aiolos. These studies uncover a novel role for OBF-1 and Aiolos in controlling the transcription and nuclear organization of genes involved in pre-BCR function.

OBF-1 or Aiolos or both were deleted and the gene expression profiles for these animals investigated using Affymetrix arrays

Keywords: Genetic modifications
 
Overall design Two control wildtype animals, then duplicates for each of the single Aiolos or OBF-1 mutants and further duplicates for the Aiolos/OBF-1 double mutants
 
Contributor(s) Oakeley EJ, Karnowski A, Matthias P
Citation(s) 18974788
Submission date Aug 06, 2008
Last update date Jan 08, 2019
Contact name Edward James Oakeley
E-mail(s) edward.oakeley@fmi.ch
Organization name Friedrich Miescher Institute for Biomedical Research
Street address Maulbeerstrasse 66
City Basel
ZIP/Postal code 4058
Country Switzerland
 
Platforms (1)
GPL339 [MOE430A] Affymetrix Mouse Expression 430A Array
Samples (8)
GSM310371 WT-1
GSM310372 WT-2
GSM310373 [OBF-1]-1
Relations
BioProject PRJNA113185

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE12356_RAW.tar 26.5 Mb (http)(custom) TAR (of CEL, EXP)
Processed data included within Sample table

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