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Series GSE123652 Query DataSets for GSE123652
Status Public on Oct 09, 2019
Title Recapitulation and reversal of schizophrenia-related phenotypes in Setd1a-deficient mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary SETD1A, a histone methyltransferase, is a key schizophrenia susceptibility gene. Mutant mice carrying a heterozygous loss-of-function mutation of the orthologous gene exhibit alterations in axonal branching and cortical synaptic dynamics, accompanied by specific deficits in working memory that recapitulates SCZ-related alterations. We show that Setd1a targets mostly enhancers and reveal a striking overlap between Setd1a and Mef2 chromatin targets. Setd1a targets are highly expressed in pyramidal neurons and enriched for genes with postnatally-biased expression involved in synaptic structure and function. Notably, evolutionary conserved Setd1a binding sites and target genes are strongly associated with neuropsychiatric genetic risk burden. Reinstating Setd1a expression in adulthood rescues working memory deficits. We identify LSD1 as a major demethylase counteracting the effects of Setd1a methyl transferase activity and show that LSD1 antagonism in adult Setd1a-deficient mice results in a full rescue of the behavioral abnormalities and axonal branching deficits. Our findings advance our understanding of how SETD1A mutations predispose to SCZ and point to therapeutic interventions.
 
Overall design Setd1a-deficient mice
 
Contributor(s) Gogos J, Lomvardas S, Mukai J, Cannavo E
Citation(s) 35680927
Submission date Dec 11, 2018
Last update date Jun 24, 2022
Contact name Joseph Gogos
E-mail(s) jag90@columbia.edu
Phone 9177426412
Organization name Columbia University
Street address 3227 Broadway, JGL Science Bldg, Quad 4A, Room L4-005
City New York
State/province NY
ZIP/Postal code 10027
Country USA
 
Platforms (2)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL21626 NextSeq 550 (Mus musculus)
Samples (32)
GSM3508773 PFC_H3K4me1_ChIPSeq_rep1
GSM3508774 PFC_H3K4me1_ChIPSeq_rep2
GSM3508775 PFC_H3K4me2_ChIPSeq_rep1
Relations
BioProject PRJNA509455
SRA SRP173306

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE123652_RAW.tar 7.2 Gb (http)(custom) TAR (of BIGWIG, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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