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Series GSE123945 Query DataSets for GSE123945
Status Public on Dec 17, 2021
Title Epithelial membrane protein-2 promotes VEGF signaling to promote pathological neovascular growth in retinopathy of prematurity
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Retinopathy of prematurity (ROP) is a leading cause of childhood blindness, and exclusively affects infants born prematurely. In this study, we test the hypothesis that EMP2 contributes to neovascularization in a mouse model of the disease. We show that EMP2 promotes neuronal VEGF signaling and that its downregulation reduces severity of neovascularization.
 
Overall design RNA-Seq was performed on RNA from frozen retinal tissues. Four replicates from the following conditions were profild: WT normoxia, EMP2 KO normoxia, WT hyperoxia, and EMP2 KO hyperoxia group at P17.
 
Contributor(s) Wadehra M, Sun M, Casero D, Aguirre B, Gordon L, Chu A
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Submission date Dec 17, 2018
Last update date Dec 17, 2021
Contact name Madhuri Wadehra
E-mail(s) mwadehra@mednet.ucla.edu
Phone 310-825-1590
Organization name UCLA
Department Pathology and Lab Medicine
Street address 675 Charles Young Dr. South/ 4726 MRL
City LA
State/province CA
ZIP/Postal code 90095
Country USA
 
Platforms (1)
GPL21493 Illumina HiSeq 3000 (Mus musculus)
Samples (16)
GSM3517545 MWMSmmKOHP1: Hyperoxia EMP2 KO #1
GSM3517546 MWMSmmKOHP2: Hyperoxia EMP2 KO #2
GSM3517547 MWMSmmKOHP3: Hyperoxia EMP2 KO #3
Relations
BioProject PRJNA510363
SRA SRP173616

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE123945_MWMSmm.genesfpkm.txt.gz 641.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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