NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE124161 Query DataSets for GSE124161
Status Public on May 01, 2019
Title The role of topical containing camellia sinensis in the cosmetic management of skin scars in healthy human volunteers
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Epigallocatechin-3-gallate (EGCG), a polyphenol, influences cutaneous wound healing due to its anti-angiogenic, anti-inflammatory and anti-oxidant properties. We previously demonstrated the role of EGCG in scarring in ex vivo human scar models. A double-blind randomised-controlled trial. Here, we evaluated application of topical EGCG compared with placebo in 62 healthy human volunteers, over 8 weeks, in scars created in their upper inner arms using skin punch biopsies. RNA sequencing was used here based on 45 samples: day 0 (n=3), week 1 (n=3 placebo, n=3 EGCG), week 2 (n=3 placebo, n=3 EGCG), week 3 (n=3 placebo, n=3 EGCG), week 4 (n=3 placebo, n=3 EGCG), week 5 (n=3 placebo, n=3 EGCG), week 6 (n=3 placebo, n=3 EGCG), week 8 (n=3 placebo, n=3 EGCG). The common differentially expressed genes identified between treated (EGCG) and placebo samples were grouped according to time point (Zonal priming: weeks 1 and 2; Direct application post scar formation (2 weeks post-biopsies): weeks 1, 2, 3, 4, 6). Further exploration of these genes using Gene Ontology and Ingenuity Pathway Analysis revealed gene signatures of relevant biological processes and pathways. Here, RNA sequencing revealed a number of angiogenic, inflammatory and antioxidant genes that were significantly downregulated with EGCG particularly at week 1 including; TPSAB1, VEGFA, EDF, IL17F, IL1A, IL1RL1, IL36A, IL36G, SOD3.
 
Overall design mRNA profiles of human skin scars over 8 weeks (treatment EGCG versus placebo) were generated by sequencing, in triplicate, using Illumina PE150 Platform.
 
Contributor(s) Bayat A, Ud-Din S
Citation(s) 30822414
Submission date Dec 20, 2018
Last update date Jun 14, 2020
Contact name Ardeshir Bayat
Organization name University of Manchester
Street address Oxford Road
City Manchester
ZIP/Postal code M139PT
Country United Kingdom
 
Platforms (1)
GPL20795 HiSeq X Ten (Homo sapiens)
Samples (45)
GSM3523179 GT01 D0
GSM3523180 GT09 D0
GSM3523181 GT19 D0
Relations
BioProject PRJNA510924
SRA SRP174003

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE124161_G1_TvsG1_C.Differential_analysis_results.txt.gz 31.6 Kb (ftp)(http) TXT
GSE124161_G2_TvsG2_C.Differential_analysis_results.txt.gz 758.5 Kb (ftp)(http) TXT
GSE124161_G3_TvsG3_C.Differential_analysis_results.txt.gz 720.7 Kb (ftp)(http) TXT
GSE124161_G4_TvsG4_C.Differential_analysis_results.txt.gz 702.3 Kb (ftp)(http) TXT
GSE124161_G5_TvsG5_C.Differential_analysis_results.txt.gz 717.7 Kb (ftp)(http) TXT
GSE124161_G6_TvsG6_C.Differential_analysis_results.txt.gz 703.4 Kb (ftp)(http) TXT
GSE124161_G8_TvsG8_C.Differential_analysis_results.txt.gz 710.3 Kb (ftp)(http) TXT
GSE124161_readcount.txt.gz 2.0 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap