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Series GSE124208 Query DataSets for GSE124208
Status Public on Dec 21, 2018
Title Rescue of premature aging defects in Cockayne Syndrome Derived Stem Cells by Targeted Gene Correction
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Cockayne Syndrome (CS) is a rare autosomal recessive inherited disorder characterized by a variety of clinical features including sensitivity to sunlight, progressive neurological abnormalities and appearance of premature aging. However, the pathogenesis of CS yet remains unclear due to the limitations of current disease models. Here we generate integration free-induced pluripotent stem cells (iPSCs) from CS patient fibroblast bearing mutations in CSB/ERCC6 and further derive isogenic gene corrected (GC)-iPSCs using CRISPR/Cas9 system. CS cellular phenotypes are recapitulated in CS mesenchymal stem cells (MSCs) and neural stem cells (NSCs), both of which display compromised susceptibility to DNA damage stress. We next map the transcriptome landscapes of CS- and GC-iPSCs and their adult stem/progenitor cell derivatives under ultraviolet (UV) and replicative stress, indicating the defects in DNA repair in confronting the acute and chronic stress contribute to CS-disease pathology. Through RNA sequencing analysis, we also identify a panel of potential targets for treating CS. Moreover, we generate clinical GC-MSCs displaying safer and superior stem cell activity in vitro and in vivo, which may provide better cell materials for future stem cell replacement therapy in CS-disease. Our models serve to facilitate the discovery of novel disease features and molecular mechanism, as well as lay a foundation for development of novel therapeutic strategies to treat CS.
 
Overall design Transcriptome analysis of human CS- and gene corrected (GC)-iPSCs, and CS-,GC-MSCs upon UV treatment or under replicative senescence stress, as well as CS-, GC-NSCs upon UV treatment.
 
Contributor(s) Liu G, Yu Y
Citation(s) 31037510
Submission date Dec 20, 2018
Last update date Jan 27, 2020
Contact name Zunpeng Liu
E-mail(s) zunpengliu@163.com
Phone +86 15510715055
Organization name State Key Laboratory of Stem Cell and Reproductive Biology
Department Institute of Zoology, Chinese Academy of Sciences
Lab Jing Qu
Street address Beichen West Road
City Beijing
ZIP/Postal code 100101
Country China
 
Platforms (1)
GPL20795 HiSeq X Ten (Homo sapiens)
Samples (24)
GSM3525709 ERCC6 mut iPSC rep1
GSM3525710 ERCC6 mut iPSC rep2
GSM3525711 ERCC6 GC iPSC rep1
Relations
BioProject PRJNA510990
SRA SRP174074

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Supplementary file Size Download File type/resource
GSE124208_RAW.tar 4.6 Mb (http)(custom) TAR (of TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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