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| Status |
Public on Jun 20, 2019 |
| Title |
Gene expression of human colon cancer HCT116 cells [HOXA5_si] |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
Abberant expression of HOXA5 is implicated in cancer development. We identified a novel long non-coding RNA (HOXA5 short RNA) transcribed from HOXA6-HOX5 locus using a next generation-based target RNA capture system. In this study, HCT116 cells were treated with siRNAs targeting the novel non-coding RNA. Gene expression levels of these cells were measured by microarray analysis.
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| Overall design |
HCT116 cells were treated with siRNAs targeting HOXA5 short RNA for 48 h. Total RNA was extracted from these cells, and gene expression was measured by human whole-genome microarray (Agilent Technology).
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| Contributor(s) |
Nishida K |
| Citation(s) |
31159758 |
| Submission date |
Dec 28, 2018 |
| Last update date |
Jun 20, 2019 |
| Contact name |
Kensei Nishida |
| E-mail(s) |
knishida@tokushima-u.ac.jp
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| Organization name |
Tokushima University Graduate school
|
| Street address |
3-18-15 Kuramoto-cho
|
| City |
Tokushima |
| State/province |
Tokushima |
| ZIP/Postal code |
7708503 |
| Country |
Japan |
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| Platforms (1) |
| GPL17077 |
Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version) |
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| Samples (3) |
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| This SubSeries is part of SuperSeries: |
| GSE124480 |
Gene expression of human colon cancer HCT116 cells |
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| Relations |
| BioProject |
PRJNA512132 |
