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Series GSE125405 Query DataSets for GSE125405
Status Public on May 14, 2019
Title AKGs enriched transcripts associated with PC-, lyso-PC and PAF metabolism
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary AKGs enriched transcripts associated with PC-, lyso-PC and PAF metabolism. Moreover, AKGs suppressed interferon response genes.
We submit heren three sets of NGS analyses. Experiment 1: We treated mouse adipose tissue macrophages (ATMs) with vehicle (ethanol) or 100 nM alkylglycerols (AKGs) for 18h in vitro. Experiment 2: We treated mouse 3T3-L1 preadipocytes with 1 nM neuropeptide FF (NPFF) for 18 h. Experiment 3: we isolated white adipose tissue from C57Black/6 male mice at 8 weeks of age, and brown adipose tissue from the same mice.
 
Overall design Experiment 1: 3 Vehicle-treated, and 3 AKG-treated samples. Experiment 2: 3 Vehicle-treated and 3 NPFF-treated samples. Experiment 3: 3 white adipose tissue (Bveh) and 3 brown adipose tissue (BAKG). In the latter case the sample naming refers to the project acronyms.
 
Contributor(s) Röszer T
Citation(s) 31081799, 34572017
Submission date Jan 21, 2019
Last update date Oct 06, 2021
Contact name Tamás Röszer
E-mail(s) tamas.roeszer@uni-ulm.de
Organization name University of Ulm
Department Institute of Neurobiology
Lab Immunity and Metabolism
Street address Albert-Einstein-Allee 11
City Ulm
ZIP/Postal code 89081
Country Germany
 
Platforms (1)
GPL23479 BGISEQ-500 (Mus musculus)
Samples (18)
GSM3573429 ATM_vehicle1 [CL100055946_L02_507]
GSM3573430 ATM_vehicle2 [CL100055946_L02_508]
GSM3573431 ATM_vehicle3 [CL100055946_L02_509]
Relations
BioProject PRJNA516229
SRA SRP181054

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE125405_DEGs_white_and_brown.xlsx 560.1 Kb (ftp)(http) XLSX
GSE125405_WAT_vs_BAT_GSM3573441-GSM3573446_NOIseq_Method.GeneDiffExp.txt.gz 3.4 Mb (ftp)(http) TXT
GSE125405_vehicle-VS-AKG.DEGseq_Method.GeneDiffExp.txt.gz 2.7 Mb (ftp)(http) TXT
GSE125405_vehicle-VS-NPFF.DEGseq_Method.GeneDiffExp.txt.gz 2.8 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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