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| Status |
Public on Feb 20, 2019 |
| Title |
Genome-wide identification and analysis of A-to-I RNA editing events in the malignantly transformed cell lines from BEP2D induced by α-particles radiation |
| Organism |
Homo sapiens |
| Experiment type |
Other
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| Summary |
Adenosine (A) to inosine (I) RNA editing is the most prevalent RNA editing mechanism in humans and play critical roles in tumorigenesis. However, the effects of radiation on RNA editing and the mechanisms of radiation-induced cancer were poorly understood. Here, we analyzed human bronchial epithelial BEP2D cells and radiation-induced malignantly transformed cells with next generation sequencing. By performing an integrated analysis of A-to-I RNA editing, we found that genome-encoded single-nucleotide polymorphisms (SNPs) might induce the downregulation of ADAR2 enzymes, and further caused the abnormal occurrence of RNA editing in malignantly transformed cells. These editing events were significantly enriched in differentially expressed genes between normal cells and cancer cells. In addition, oncogenes CTNNB1 and FN1 were highly edited and significantly overexpressed in cancer cells, thus may be responsible for the lung cancer progression. Our work provides a systematic analysis of RNA editing from lung tumor specimens with high-throughput RNA sequencing and DNA sequencing. Moreover, these results demonstrate further evidence for RNA editing as an important tumorigenesis mechanism.
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| Overall design |
we analyzed human bronchial epithelial BEP2D cells and radiation-induced malignantly transformed cells with next generation sequencing. Then we identified RNA editome by three identification method. We integrated these RNA editome to eight stages and record their position, reference, alter, strand, editing level.
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| Contributor(s) |
Liu Q, Zhao C, Chen H, Li H |
| Citation(s) |
31158229 |
| Submission date |
Feb 19, 2019 |
| Last update date |
Jun 24, 2019 |
| Contact name |
Chenghui Zhao |
| E-mail(s) |
zhaoch12@gmail.com
|
| Phone |
18800113206
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| Organization name |
Beijing Institute of Radiation Medicine
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| Street address |
Haidian Taiping Road 27
|
| City |
Beijing |
| ZIP/Postal code |
100850 |
| Country |
China |
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| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (9)
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| Relations |
| BioProject |
PRJNA523118 |
| SRA |
SRP186229 |
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