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Series GSE127764 Query DataSets for GSE127764
Status Public on Mar 31, 2019
Title Force expression LNK suppresses interferon Gamma signaling
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary LNK (SH2B3) is a key negative regulator of JAK-STAT signaling which has been extensively studied in malignant hematopoietic diseases. We found that LNK is significantly elevated in cutaneous melanoma; this elevation is correlated with hyperactive signaling of the RAS-RAF-MEK pathway. Elevated LNK enhances cell growth and survival in adverse conditions. Forced expression of LNK inhibits signaling by interferon-STAT1 and suppresses interferon (IFN) induced cell cycle arrest and cell apoptosis. In contrast, silencing LNK expression by either shRNA or CRISPR-Cas9 potentiates the killing effect of IFN. The IFN-LNK signaling is tightly regulated by a negative feedback mechanism; melanoma cells exposed to IFN upregulate expression of LNK to prevent overactivation of this signaling pathway. Our study reveals an unappreciated function of LNK in melanoma and highlights the critical role of the IFN-STAT1-LNK signaling axis in this potentially devastating disease. LNK may be further explored as a potential therapeutic target for melanoma immunotherapy.
 
Overall design mRNA profiles of Control and LNK overexpressing cells were generated by deep sequencing using BGISEQ-500.
 
Contributor(s) Ding L, Sun Q, Edwards JJ, Fernández LT, Ran X, Zhou S, Scolyer RA, Wilmott JS, Thompson JF, Doan N, Said JW, Venkatachalam N, Xiao J, Loh X, Pein M, Xu L, Mullins DW, Yang H, Lin D, Koeffler HP
Citation(s) 31110180
Submission date Mar 04, 2019
Last update date May 29, 2019
Contact name SIQIN ZHOU
E-mail(s) siqin_5@hotmail.com
Organization name Cancer Science Institute of Singapore
Street address 14 Medical Drive
City Singapore
ZIP/Postal code 117599
Country Singapore
 
Platforms (1)
GPL23227 BGISEQ-500 (Homo sapiens)
Samples (4)
GSM3638362 A375_RNA-seq
GSM3638363 A375 + FNG_RNA-seq
GSM3638364 A375 WTOE_RNA-seq
Relations
BioProject PRJNA525355
SRA SRP187403

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE127764_RAW.tar 398.2 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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