NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE130002 Query DataSets for GSE130002
Status Public on Dec 25, 2019
Title Bisulfite sequencing of medaka PGCs methylomes
Organism Oryzias latipes
Experiment type Methylation profiling by high throughput sequencing
Summary Medaka PGCs methylomes were sequenced using whole genome bisulfite sequencing (WGBS)
 
Overall design Three biological replicates for each stage
Web link https://0-doi-org.brum.beds.ac.uk/10.1080/15592294.2019.1695341
 
Contributor(s) Bhandari RK
Citation(s) 31851575
NIH grant(s)
Grant ID Grant title Affiliation Name
R21 ES027123 Germline transmission of epigenetic alterations to offspring induced by bisphenol A exposure UNIVERSITY OF NORTH CAROLINA AT GREENSBORO Ramji Kumar Bhandari
Submission date Apr 17, 2019
Last update date Dec 27, 2019
Contact name Ramji Kumar Bhandari
E-mail(s) rkbhanda@uncg.edu
Organization name University of North Carolina Greensboro
Department Biology
Lab Bhandari Laboratory
Street address 321 McIver St
City Greensboro
State/province NC
ZIP/Postal code 27412
Country USA
 
Platforms (1)
GPL23039 Illumina NextSeq 500 (Oryzias latipes)
Samples (15)
GSM3729180 PGCs 25dpf male rep1
GSM3729181 PGCs 25dpf male rep2
GSM3729182 PGCs 25dpf female
Relations
BioProject PRJNA533476
SRA SRP192923

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE130002_RAW.tar 1.7 Gb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap